NGGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACATCAGTATTCTCCACTGTCTTCTTGTGTTTCTCCACTTAAA
TTTCCTTTAGGTGACATTTTGTTGTTGTTATGGCTAAAGAGAATGAAGTC
AAGGTTAGAAGGATTGGTCGCAAGAATCAGTAACTACAGGGCCACCAATG
GAGCAAAGGTTTATAGGGAAGATGTCTGGTACTTTTAAAATTTTTATGAA
GGAAGAGTCGGAATAAGATATTAAATTTGTCTTAGCAAACACAGGTTCTT
TTCCTTCAGCGTTAGACTGTTATTTAACCTCTTTCTCATTCATTGGCTTC
CTCTCCAGTGCTGTAATTTTCTCTCATTATTTACATAGGATGACTGCATA
TTTACTCTAGATGGGAAAGAAAATATATATTGAAAGACCTTTGTCATTGA
ACTAGCAACGAGGCTTTAATCTACTAAGAATAGTCTTTTAGTGCCCTAAA
TCTTTTTATCTTTCTGTGAATTACCACTTGGTGTGCCAAGGCCAAACATC
AAAGGGGCCACAGACTTCCCCAACAGTTAAGTGGGCTAGCTGCTTTGGGG
GTTTCTGCTAATTGGTTGATAAAAGCCTCTCCAGAGCCAGAACTTCTGAG
TGATCAGATAATAGAAGGCAGTGTGTACAGGAAGTCTCAGAAATTCCCAT
CCCCC

NNNCCAATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXGGTTCTTTGAGAAAATTGGTTCTAA
TCCAAATTAAGTTCAGGGAGGAAGTAATATGCAAATTAAAAATAAAAATT
AAAATGAGATGTAAAAAAATCACAATGGAAATACAGAAAGTTCCAAGGAC
GTGCTTTAAAAATCTGTGCTCTTTGCCATTAAAAAATGAAAAGAAGTAGA
TGCTTTTTCAATAGATATCACAAACTAAAATCTATATCAGATATGCAATT
TAAGAAATCCTCATTGAAATAAAAACACAAACTGAAAGTCTCCCAAACCA
ACGGAAGAAGCTCCTCAGGCATAGATACTTTTAGTCCCGAATTCCACCAG
ACCCTCAAGGAAGTATTAACCCCAATACTCCTCAAACTATTCCACAAACT
AGAAGCTGAAGAGAAGAAACATTGCCCAATTCGTTATATGAGGCCACAGT
TAACCTGATACGCAAGGGACATAAAGGTCCAACCAAGAAATAGAATTAGA
ATAGAAATTTCAAATTAGAAATAGAATTTCCATTATGAACACTGACACAA
AAAAATTACCAATTAAATACTTGAAAACAAAGTCTAAAACACATTAAAAA
AATCTACCATGATCAAGTAGGCTTCATTCCATAGATGCAGAGATGATCCA
ACATATAAA

Query= MSMg01no120_k03.b1 MSMg01no120_k03.b1 CHROMAT_FILE:
MSMg01no120_k03.b1 PHD_FILE: MSMg01no120_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:08 2005
         (658 letters)



>mm_chr3_59972869_59973926
          Length = 1058

 Score = 1220 bits (631), Expect = 0.0
 Identities = 649/655 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacatcagtattctccactgtcttcttgtgtttctccacttaaatttcctttag 63
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacatcagtagtatccactgtcttcttgtgtttctccacttaaatttcctttag 263

                                                                       
Query: 64  gtgacattttgttgttgttatggctaaagagaatgaagtcaaggttagaaggattggtcg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtgacattttgttgttgttatggctaaagagaatgaagtcaaggttagaaggattggtcg 323

                                                                       
Query: 124 caagaatcagtaactacagggccaccaatggagcaaaggtttatagggaagatgtctggt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caagaatcagtaactacagggccaccaatggagcaaaggtttatagggaagatgtctggt 383

                                                                       
Query: 184 acttttaaaatttttatgaaggaagagtcggaataagatattaaatttgtcttagcaaac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acttttaaaatttttatgaaggaagagtcggaataagatattaaatttgtcttagcaaac 443

                                                                       
Query: 244 acaggttcttttccttcagcgttagactgttatttaacctctttctcattcattggcttc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acaggttcttttccttcagcgttagactgttatttaacctctttctcattcattggcttc 503

                                                                       
Query: 304 ctctccagtgctgtaattttctctcattatttacataggatgactgcatatttactctag 363
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctctccggtgctgtaattttctctcattatttacataggatgactgcatatttactctag 563

                                                                       
Query: 364 atgggaaagaaaatatatattgaaagacctttgtcattgaactagcaacgaggctttaat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atgggaaagaaaatatatattgaaagacctttgtcattgaactagcaacgaggctttaat 623

                                                                       
Query: 424 ctactaagaatagtcttttagtgccctaaatctttttatctttctgtgaattaccacttg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctactaagaatagtcttttagtgccctaaatctttttatctttctgtgaattaccacttg 683

                                                                       
Query: 484 gtgtgccaaggccaaacatcaaaggggccacagacttccccaacagttaagtgggctagc 543
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 684 gtgtgccaaggccaaacatcaaaggggccacagacttacccaacagttaagtgggctagc 743

                                                                       
Query: 544 tgctttgggggtttctgctaattggttgataaaagcctctccagagccagaacttctgag 603
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tgctttgggtgtttctgctaattggttgataaaagcctctccagagccagaacttctgag 803

                                                                  
Query: 604 tgatcagataatagaaggcagtgtgtacaggaagtctcagaaattcccatccccc 658
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tgatcagatgatagaaggcagtgtgtacaggaagtctcagaaattcccatccccc 858


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)