BAC Information

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BAC

Clone NameMSMg01-120O12
Chromosome3 (Build37)
Map Location 155,496,928 - 155,497,466
singlet/doubletsinglet
Overlap genenone
Upstream geneTnni3k, Fpgt, Lrrc44, EG383956, Scp2-ps1, EG668902
Downstream geneLOC624519, LOC100040901, 4930570G19Rik, Negr1, LOC100041152, LOC668853
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120O12.T7 (MSMg01no120_o12.b1)MSMg01-120O12.TJ (MSMg01no120_o12.g1)
ACCAG331155AG331156
length691682
length of high quality
(start - end)
558 (63 - 620)242 (57 - 298)
definitionCHROMAT_FILE: MSMg01no120_o12.b1 PHD_FILE: MSMg01no120_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:30 2005CHROMAT_FILE: MSMg01no120_o12.g1 PHD_FILE: MSMg01no120_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:30 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
GCGGCCGCTAAACGACTACTATTCGAAGAGGATCCGCGGAATTCTTTGCT
ACCCCTAGGCCCAAGCCACTGGCTTCTGGCAATTAACTCCTGCAAGTAGC
AGGAGATTAAGAAAAAAAAGGCTTAATTGTTAGGGCTCTTTTCTCTCTGG
CTCAAAGGCCCCTTGCTAGCAAGGCCAAAGGCTTGGAGTTCTTTAACCTT
ACAGAAAAGAAAGAAAGAAACAAGGAAACAAGGAAAAGAGAAAGTTCAGA
AACTGCGGGGGAAAAAAAAATCATTCTCCTTGGGTGGAGCTGAAGAAAGC
TACACCGTTTATTTTGGTTTTCAGTATTGATACTTTCTCTAAAAAGTTAC
ATCATACAAATGCAAGGTAAAACCACTGCAGCCCCATATATTATATGGGG
CATATAATATATTTCATGATATTTAAAATGCTTTTACATCCCAATAAGTT
CATAGTAAGTTTAAGGCAATAATTCATGTCACAAATTGATAAGACTTAAG
GAATAACGGCAGAATTGCTTACATATCTTTCCATCAATAGTAGACTCTCA
CTAAATATTCATTATGTCTTCCTAGCACCAGAAGTTCTTTATAAGTTTAA
AGCACTGTTTTTTATGACATACGTTAGCATTTTTATTGTGAATCAATATT
TTTTTCCTTTTTAAATATTTTTATTACGAATTTTCCTCATC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXACAATTGTCTTACTTCTATTATCAATCGCCATGAGTGAAGACAA
GAAGCACCATACCTGGTGATATGACAACAATGTTATATATACTTCACACA
CACACACACACACACACACACACACACACACACACATGTATGCATGTATG
TATATTATGTATATGTATTATGTGTATATGTATATATATATATATGCAAA
TATATATACATACATGTGTGTGCATTTGTATATACATACATGTAGACACA
TGAATAGATAGTTTTGTAGAGAGACAAAGAGGTAGGCAGATATATAGAAA
GACACATACTGATCGATGAGTGTATGCTCATATGGTCATTCTTGGTCTTG
AAGAAATATGGTTTATCTGCAGCAAAATAAAGAGACCTTTGAAATATTCT
GACATGGACATGTCATAAAATCCACCAAAAAATAGCCCCATATCTCTTAG
CTTTTAGAGATTATGGGCATAGCTTTCTCTGATGCTCCTCCTGTTCTGTG
CCAGTTGGCATGCTTTAGTTCTAAGGAAAGTTCTGGGACTGTCTTCCTTA
TTGACTTCCATTTTCTTATTTAAAAAATATGCATCAGTACAGGGGAATGG
CAAGGCCAATAAGTGGTATTGGGTGAGTAGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_o12.b1 MSMg01no120_o12.b1 CHROMAT_FILE:
MSMg01no120_o12.b1 PHD_FILE: MSMg01no120_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:30 2005
         (558 letters)



>mm_chr3_155496784_155497738
          Length = 955

 Score =  932 bits (482), Expect = 0.0
 Identities = 531/560 (94%), Gaps = 23/560 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagccactggcttctggcaattaactcctgcaagtagcaggagattaag--aaaaaaaag 58
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 683 aagccactggcttctggcaattaactcctgcaagtagcaggagattaagaaaaaaaaaag 624

                                                                       
Query: 59  gcttaattgttagggctcttttctctctggctcaaaggccccttgctagcaaggccaaag 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gcttaattgttagggctcttttctctctggctcaaaggccccttgctagcaaggccaaag 564

                                                                       
Query: 119 gcttggagttctttaaccttacagaaaagaaagaaagaaacaaggaaacaaggaaaagag 178
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gcttggagttctttaaccttagagaaaagaaagaaagaaacaaggaaacaaggaaaagag 504

                                                                       
Query: 179 aaagttcagaaactgcgggggaaaaaaaaatcattctccttgggtggagctgaagaaagc 238
           ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aaagttcagaaactgc---ggaaaaaaaaatcattctccttgggtggagctgaagaaagc 447

                                                                       
Query: 239 tacaccgtttattttggttttcagtattgatactttctctaaaaagttacatcatacaaa 298
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tacaccatttattttggttttcagtattgatactttctctaaaaagttacatcatacaaa 387

                                                                       
Query: 299 tgcaaggtaaaaccactgcagccccatatattatatggggcatataatatatttcatgat 358
           ||||||||| ||||||||||||||               |   |||||||||||||||||
Sbjct: 386 tgcaaggtagaaccactgcagccc---------------g---ataatatatttcatgat 345

                                                                       
Query: 359 atttaaaatgcttttacatcccaataagttcatagtaagtttaaggcaataattcatgtc 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 atttaaaatgcttttacatcccaataagttcatagtaagtttaaggcaataattcatgtc 285

                                                                       
Query: 419 acaaattgataagacttaaggaataacggcagaattgcttacatatctttccatcaatag 478
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 284 acaaattgataagacttaaggaatcacggcagaattgcttacatatctttccatcagtag 225

                                                                       
Query: 479 tagactctcactaaatattcattatgtcttcctagcaccagaagttctttataagtttaa 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 tagactctcactaaatattcattatgtcttcctagcaccagaagttctttataagtttaa 165

                               
Query: 539 agcactgttttttatgacat 558
           |||| |||||||||||||||
Sbjct: 164 agcaatgttttttatgacat 145


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 955
Length adjustment: 10
Effective length of query: 548
Effective length of database: 945
Effective search space:   517860
Effective search space used:   517860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)