BAC Information

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BAC

Clone NameMSMg01-121H22
Chromosome3 (Build37)
Map Location 118,351,744 - 118,351,992
singlet/doubletsinglet
Overlap geneDpyd
Upstream gene4833424O15Rik, EG668759, Snx7, LOC100043260
Downstream geneLOC100043275
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121H22.T7 (MSMg01no121_h22.b1)MSMg01-121H22.TJ (MSMg01no121_h22.g1)
ACCAG331595AG331596
length718754
length of high quality
(start - end)
289 (75 - 363)251 (73 - 323)
definitionCHROMAT_FILE: MSMg01no121_h22.b1 PHD_FILE: MSMg01no121_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:17 2005CHROMAT_FILE: MSMg01no121_h22.g1 PHD_FILE: MSMg01no121_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGC
GGAATTCTAAATTCTCCACATCTGTGCTCCAAATGCAAGGACACCATGTA
AATAAAAGAAACTTTATTAAAGCTCAATGTACACATTGCACCTCACACAA
TAATAGTGAAGGATTTCAACACCCCACTCTGATCAATGAACAAATTAGGA
AAACACAAAGACACAGTGAAACTAACAAATTGATGTTAACAGATATCTAT
AGAACATTTAATCCTAAATCAAAAGAATATATCTTCTTCTCAGCACTTCA
TGGTACATTCTTCAAAGTTGACTATATAATCAGTCACAAAACAGATCTCA
ATAGATATAATAAGTATTATAACCCCCCCCCGCTGTCCTATCAGATCACT
GTGGATTAAGGCTGGTCTTCAATGGCAACACATACAACAGAAACCCCACG
TACACATCGAAGCTGAACAACACTCAACTCAATGATAATTCATCAAGGAA
GAAATATTTAAAGAAATGAAAGACTTTTTATAATTTAATGAAAATGATTG
TATAGCATACCCCAACTTATGTGACTAAATGAACGCATTCCTCAGAGTAA
AACTTATAGTTCTGAGTGCCTCTTAAAGGAAATTGGTTAAAGTTTACTCT
ATCGGCTTTCTATTTCTCTCGATAGCTCTAGAACAAAAGATATTAATATA
CTTATAAGGATATCACGG
ATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAGATCCTCCATTTGGTACTCAGAAAACTT
AACAAAGCCAATTACAAAACCATATGCCTATAAGCTCAGAACTCAAAAGA
GAAAGGACTGTAGATGTGTGGTCTTTCTGATCCATACATGGAGACCTTGT
CTCAAAAGAAATGTGGAGCACGTAGGGGGAAAGGAAGAAAGAGAAAGAGA
AGGAGGAGGAGAAAAGATATAGGAAAGGAAAAACGAAAGAGGCAGGGGAG
GGAATGAAGGAGGTAGGGAGGTTTTTTTTTTCTCCCCTTTCCCCCCTCCC
TTTTCCCCCCTTTTTCTTCCCTCCCCCCCCCCCCCCTCCTTCCCTCGCCG
GTCCTCCCCTTTCCCTCCCCTTTCAAACAACACCCTTCTCCCTCCCCGCC
CCTCTCCTCCTCTCCTCTCTTCCCTTTTCCTTCCCCTCCTCCTCCCCCCC
CCATCTCCTTTCCTCCTCCTATCCCCCTCTCTCTCCTCCCTCATCTTCCC
CCTTCCCCTTTACCCCCCCCCTCCTCTTCCCCCCCTCTTCCCCACCCTCT
CCTCCCTCTCCTTATATCTACCCTCCTCCCCCCTTTTCCTCCTCCCACTC
CCTCTTCTCTCTTCCCCCCTCCCCTATCTCCGCTCCTTCTTTTCCTCTTT
CCCCCCCCCCATCCTCTCCCCTCTCCCTTTCTCGTCCCCCTCCTTCCGAC
TTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_h22.g1 MSMg01no121_h22.g1 CHROMAT_FILE:
MSMg01no121_h22.g1 PHD_FILE: MSMg01no121_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:17 2005
         (251 letters)



>mm_chr3_118351544_118352194
          Length = 651

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatcctccatttggtactcagaaaacttaacaaagccaattacaaaaccatatgcctata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatcctccatttggtactcagaaaacttaacaaagccaattacaaaaccatatgcctata 260

                                                                       
Query: 61  agctcagaactcaaaagagaaaggactgtagatgtgtggtctttctgatccatacatgga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 agctcagaactcaaaagagaaaggactgtagatgtgtggtctttctgatctatacatgga 320

                                                                       
Query: 121 gaccttgtctcaaaagaaatgtggagcacgtagggggaaaggaagaaagagaaagagaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaccttgtctcaaaagaaatgtggagcacgtagggggaaaggaagaaagagaaagagaag 380

                                                                       
Query: 181 gaggaggagaaaagatataggaaaggaaaaacgaaagaggcaggggagggaatgaaggag 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 gaggaggagaaaagatataggaaaggaaaaacaaaagaggcaggggagggaatgaaggag 440

                    
Query: 241 gtagggagg 249
           |||||||||
Sbjct: 441 gtagggagg 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)