BAC Information

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BAC

Clone NameMSMg01-121O03
Chromosome3 (Build37)
Map Location 118,143,308 - 118,143,471
singlet/doubletsinglet
Overlap genenone
Upstream gene4833424O15Rik, EG668759, Snx7, LOC100043260
Downstream geneDpyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121O03.T7 (MSMg01no121_o03.b1)MSMg01-121O03.TJ (MSMg01no121_o03.g1)
ACCAG331883AG331884
length789828
length of high quality
(start - end)
166 (110 - 275)---
definitionCHROMAT_FILE: MSMg01no121_o03.b1 PHD_FILE: MSMg01no121_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:48 2005CHROMAT_FILE: MSMg01no121_o03.g1 PHD_FILE: MSMg01no121_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATTTTANNNNNNNCNCNNCCNNNNNNCGNNTCNCCGCNNCCNCCATC
TAAAAAATTATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCTTTGATTCTTCCAAATAACACTTTAATATACTA
TAATGGGAAATCATTTCATGTGTCCATCACCTCTTGCATTTTATTTAAAA
TTAAAATGTAACTACCTGTACTATTCATAATCTTTAACTGTCAATCAATA
CAAATATATATATATATATCACATAGTATAATAATTATTTCTCCATAGCT
TATAGATATGCACAATTATTAATATGTTTTTTTATTACTATTTATGGAAG
CAGACTTAATTGCCACTTCTTTTGAAAGCTGTTATATCCCTGTTTATCCC
ACACACCACAATTATTAGTTTACTCCTAATCTCAAATAGTAAATACGTTT
TTTAATTTTGAATATTATACATGTTGTCAGCTCTTATATCGATTAGATAT
TCCTCTACCTGTCCAAAAGCCATGTCAACACTATTACATACCATGTCATT
TTAATATTTCTAACACAACACTATCAATTTTGCTTTTATCTTTTCCTCAT
CCCCCTGATTTTCTTTATCTGCTTGCCAAACAAAAAAAATAACGCTCTAG
AACCCATTTGACTAACTTCTTATTTCTAAATTGCATTTTTTTAATATACC
TCTAGCCCATATTTTTTAATATATAAACGCTTTTTAACTGACCCCCTATT
AATTACAAACTCAAAAACCCCAAAAACGCATTTTAATTT
NTTTTTTTTTTTTTTTTNNTNNTTAATCCCNNCATCCCCTCTCCCCCTCA
TTTACCGCTAACACGATGCATAAGGCATGCCTGGAGGNCGACTGTTCTTA
CAAAGTTAGGTGACACTATAGATTTCCCCGCGCAATTCTTATCTACTGAT
GGGTATGAGGCAGCTATTAGCTTTAATAATAGCTTGTTTCCCCCATGAAA
AGATCCTCTATTTACATCCCAACGACCACTCATCTGAACTTGTGAAGACT
GAGGTAGGATACATAGGATCTGTACCTATCTACAACAGATGGGGCCTTAG
AGCTTAAGGAGCGGTCTCCTGACTATATCTACTCCACCCGAAGCTATCTT
CAATTGTCGGTCCTTTCGCCTACCCTCCTTACCTGTTTCACTATCCCCAG
GAATCGGTCATTCCGTTATATATTTCAGTTTGTGTAACTTAGCTGTTTTT
TTTTCTCACCCGCGGCACATACTTTTTATATTTCGCGATCTATTACTAAT
TAACATTATTGTCTCTCCCTGGCATATTGATATTTACTACCAACCTGTCA
CCCATGTTTTTTTTTTTAACCACGGTCCCTTGTTCCCATTCATTATTAAT
TCTCACACTATCCCCCCGCCCCCCTAACATCTCTTTTTTATTGCCTCCCC
TTTTTTCCCCGGTGTTTCAACTTACACTCGCCCGATTCCCCTATTATAAT
TTTTATTTTCTTGCCCCCTCTTCCCTCCCTCCACATATAAAAATAATAAA
TATAAAACGCGTCCCACCCTTTATCTCCCTATGCCCCAGTTATTCCCCCA
TATTTTTTTATCTCCCACCCCCACCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_o03.b1 MSMg01no121_o03.b1 CHROMAT_FILE:
MSMg01no121_o03.b1 PHD_FILE: MSMg01no121_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:48 2005
         (166 letters)



>mm_chr3_118143106_118143671
          Length = 566

 Score =  273 bits (141), Expect = 5e-78
 Identities = 159/167 (95%), Gaps = 6/167 (3%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattctttgat---tcttccaaataacactttaatatactataatgggaaatcatttca 59
           ||||||||||||   |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctttgataaat--tccaaataacactttaatatactataatgggaaatcatttca 260

                                                                       
Query: 60  tgtgtccatcacctcttgcattttatttaaaattaaaatgtaactacctgtactattcat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgtccatcacctcttgcattttatttaaaattaaaatgtaactacctgtactattcat 320

                                                          
Query: 120 aatctttaactgtcaatcaatacaaatatatatatatatatcacata 166
           |||||||||||||||||||||| | ||||||||||||||| ||||||
Sbjct: 321 aatctttaactgtcaatcaatatatatatatatatatata-cacata 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 566
Length adjustment: 8
Effective length of query: 158
Effective length of database: 558
Effective search space:    88164
Effective search space used:    88164
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)