BAC Information

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BAC

Clone NameMSMg01-122B24
Chromosome3 (Build37)
Map Location 149,102,481 - 149,250,041
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040354, Lphn2, LOC100040368, LOC668893, EG381483
Downstream geneLOC100040620, LOC100040633, LOC100040455, LOC100040463, LOC623554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122B24.T7 (MSMg01no122_b24.b1)MSMg01-122B24.TJ (MSMg01no122_b24.g1)
ACCAG332066AG332067
length1,1461,149
length of high quality
(start - end)		565 (73 - 637)497 (85 - 581)
definitionCHROMAT_FILE: MSMg01no122_b24.b1 PHD_FILE: MSMg01no122_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:15 2005CHROMAT_FILE: MSMg01no122_b24.g1 PHD_FILE: MSMg01no122_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,249,477 - 149,250,041)(149,102,481 - 149,102,977)
sequence
ATTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTCA
ATACATATCTGCTTTCAATACATATGTTACATATTTACCCATTCTAGCAA
TGACAGAGCCTGTTATTGTAACTGGGGATCGAATTTTCATGAAAAAGTTA
ACTTTTCTTCATTCTTCTTCTTTTATAGATTTCAAAACTCATAGTTAACA
CATAAAAACTTTCTAAGAAATTGCATAATTTTTCAAGAGTTTGCAATTTC
TAAATCCTACTTACACCAGAGAAGCCACTGGGTATATGCGACTTTCTTTC
CCCCACCTTTCCTGTTACTACAAATGGCATGTGTAAGACTATTCTAAACA
TCTACCACCAACAGCACACAATTTGACTTTTGAGCTTCCTGTGTGTTTAT
GATGCCTGCAAACCAATGTAATGCCTTCCTTGTTATCACACATTTTCTAG
TCTAAGGCAAGAGACAGAAGCTTGATCGGATTGGGGGTCTCTTTCCATAT
ACTTAGGTTATCCAATATTTCTCTAAAAACCCGTCAAGCCACTGTCAGAG
GTACTATGTCATATAGCAAGATCATAAATGGATGGTAGATACTGATTTTT
TACATTGTAAATGTAAAATCTATTTTGGTGAAGGGTTACAGTTCAGAATC
TGTTGTGGTATAATGATAGGTTCTCAAGATCTACCCCAGAGTGTCCTCAG
TTTTCTCTGAGACCTGTGAGAAACCATTTGAATTGCACTCAGGTATCCAT
TGTGAAGATTCTGTCTTTGCCCATTTTATTGCTGCTATCCATTTTTTCTT
TTTCTTTTTCCTTCCTTGCAAATAAAAACTTGTTGTCAATCTTTGCCATC
ATATTTGGAAAGAAAAGGGTTTATTTTAAAACTTTATTTCCTTTGCCCAC
TTGGCCTGTCTTGGAACCCATTTTGTAATGAAACAATATCATATTTCATA
AACCTCCTTTCCTCCTTTCCATATAACCCTTTAACACATAACCCCGTCTC
CTAGAAACACCTTGGGTTTTGGCTTTTTCTCGAACAAAAAAAAAAAAACT
GTGCTCTCCTTTGTGGTGGCTTTATAATCAATGTCCCCTTATATTTCTTC
TCTGTGTGAAAGCATAAAACATTCCATTCATACCAAACTCTTTTCT

TTTTCCTTNAAACGAGTGGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTTCTTTTTCGAACTTGGCTCATGGTC
ACAAATGCTCTCTGTGGACTTTGTTACAGGATTGCTAATTCCACCCATCT
ACAGCAGAGTCTCCTCCTACCCTAGTGCTTTCCCTGGCCTTGTCTCCTCT
CAGGACCAAAGCTTCGGGACAAAGAGTATGCTGTGTTTAAGATTAATTAC
TATTGGCACGTCACTGAAAGTTATGAAGATTTGATAGTACAAGTTAACAA
GCTGGAAATGGTGGTTAATAAGAAACACCTCGGTCCGGATCCTTTAATAT
CAGCTAACCTTTTCCCCATTTCAGAGAACGCCGCTCTCCTCAACCTTGTA
CTAGTTTCCATGTTTCTGTGATTTTTGTTGCCTTTTCATTTTCTCATTCT
TTCCACTCAATTCTTACAGCAGTTGTGTCTCTGTTTCATGTCACAATGAG
AAACTCATTTGTATGAAACACATTTAACCTTTTTATTCAGTGGGCTTAGT
TCTTCCCTCACACTTTTTTTTTTTAAAGTTGAGCACACGTACACTATTAT
ATTTTTGGGAGAGCACAGCTCCAGTGGTGGAGCATAGAAATATTTTTTTG
ACAAATATAATTTTACAAAATTGAAATATTTTGTAAAGAGAACTGGATCT
CTTATTGCCCCTGAAACAAAATTGGAGTATATAAATTGTCCTCGCCCCAT
TAAAAAGTAAGCCCGTGAATTGTCTACCCATTAATTAAACATAGACCCTT
GGCTTAGCATAGGGTCCAGATCTGGGAAAAATGGCATCTGATTTTCCTCC
CCAATTAATTTTTAGTTGCTGCCAATTGCAGGAATTATTTATCCTCCTTA
ATTTTTACAAACCCCTACAAAATCCAAAGGTTGGAAATATTGCCTGTAAG
GAAACTTTCCGCCCCCCGCTGAACAATGGAAGTCTCGTCTGTGGCAAACG
GAAAGGCTCCCTTTTAAATTTTTTGCTGGGCAAAAAAGAATTTGCAATAT
GGAACTCTCCACTCTAATTCTTCCCCCCCCTCCCCCCTTCCCAACTCCTC
XXXXXXXXXXXXXXXXXXXXXXXXCCACCCCGCTCCTCTCCCTCTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_b24.b1 MSMg01no122_b24.b1 CHROMAT_FILE:
MSMg01no122_b24.b1 PHD_FILE: MSMg01no122_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:15 2005
         (565 letters)



>mm_chr3_149249277_149250241
          Length = 965

 Score = 1085 bits (561), Expect = 0.0
 Identities = 564/565 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgttacatatttacccattctagcaatgacagagcctgttattgtaactggggatcga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 tatgttacatatttacccattctagcaatgacagagcctgttattgtaactggggatcga 706

                                                                       
Query: 61  attttcatgaaaaagttaacttttcttcattcttcttcttttatagatttcaaaactcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 attttcatgaaaaagttaacttttcttcattcttcttcttttatagatttcaaaactcat 646

                                                                       
Query: 121 agttaacacataaaaactttctaagaaattgcataatttttcaagagtttgcaatttcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 agttaacacataaaaactttctaagaaattgcataatttttcaagagtttgcaatttcta 586

                                                                       
Query: 181 aatcctacttacaccagagaagccactgggtatatgcgactttctttcccccacctttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 aatcctacttacaccagagaagccactgggtatatgcgactttctttcccccacctttcc 526

                                                                       
Query: 241 tgttactacaaatggcatgtgtaagactattctaaacatctaccaccaacagcacacaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tgttactacaaatggcatgtgtaagactattctaaacatctaccaccaacagcacacaat 466

                                                                       
Query: 301 ttgacttttgagcttcctgtgtgtttatgatgcctgcaaaccaatgtaatgccttccttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ttgacttttgagcttcctgtgtgtttatgatgcctgcaaaccaatgtaatgccttccttg 406

                                                                       
Query: 361 ttatcacacattttctagtctaaggcaagagacagaagcttgatcggattgggggtctct 420
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 405 ttatcacacattttctagtctaaggcaagagacagaagcttgatcagattgggggtctct 346

                                                                       
Query: 421 ttccatatacttaggttatccaatatttctctaaaaacccgtcaagccactgtcagaggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ttccatatacttaggttatccaatatttctctaaaaacccgtcaagccactgtcagaggt 286

                                                                       
Query: 481 actatgtcatatagcaagatcataaatggatggtagatactgattttttacattgtaaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 actatgtcatatagcaagatcataaatggatggtagatactgattttttacattgtaaat 226

                                    
Query: 541 gtaaaatctattttggtgaagggtt 565
           |||||||||||||||||||||||||
Sbjct: 225 gtaaaatctattttggtgaagggtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no122_b24.g1 MSMg01no122_b24.g1 CHROMAT_FILE:
MSMg01no122_b24.g1 PHD_FILE: MSMg01no122_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:15 2005
         (497 letters)



>mm_chr3_149102281_149103177
          Length = 897

 Score =  907 bits (469), Expect = 0.0
 Identities = 490/497 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacttggctcatggtcacaaatgctctctgtggactttgttacaggattgctaattccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| 
Sbjct: 201 aacttggctcatggtcacaaatgctctctgtggactttgttacaggatttctaattccat 260

                                                                       
Query: 61  ccatctacagcagagtctcctcctaccctagtgctttccctggccttgtctcctctcagg 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatctacagcagagtatcctcctaccctagtgctttccctggccttgtctcctctcagg 320

                                                                       
Query: 121 accaaagcttcgggacaaagagtatgctgtgtttaagattaattactattggcacgtcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accaaagcttcgggacaaagagtatgctgtgtttaagattaattactattggcacgtcac 380

                                                                       
Query: 181 tgaaagttatgaagatttgatagtacaagttaacaagctggaaatggtggttaataagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaagttatgaagatttgatagtacaagttaacaagctggaaatggtggttaataagaa 440

                                                                       
Query: 241 acacctcggtccggatcctttaatatcagctaaccttttccccatttcagagaacgccgc 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 acacctcggtcgggatcctttaatatcagctaaccttttccccatttcagagaacgctgc 500

                                                                       
Query: 301 tctcctcaaccttgtactagtttccatgtttctgtgatttttgttgccttttcattttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctcctcaaccttgtactagtttccatgtttctgtgatttttgttgccttttcattttct 560

                                                                       
Query: 361 cattctttccactcaattcttacagcagttgtgtctctgtttcatgtcacaatgagaaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cattctttccactcaattcttacagcagttgtgtctctgtttcatgtcacaatgagaaac 620

                                                                       
Query: 421 tcatttgtatgaaacacatttaacctttttattcagtgggcttagttcttccctcacact 480
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 tcatttgtatgaaacacatttaacctttgtattcagtgggcttagttcttccctcacact 680

                            
Query: 481 ttttttttttaaagttg 497
           |||||||||| ||||||
Sbjct: 681 tttttttttttaagttg 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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