Query= MSMg01no122_c24.b1 MSMg01no122_c24.b1 CHROMAT_FILE:
MSMg01no122_c24.b1 PHD_FILE: MSMg01no122_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:22 2005
(735 letters)
>mm_chr3_143289539_143290675
Length = 1137
Score = 1278 bits (661), Expect = 0.0
Identities = 724/761 (95%), Gaps = 28/761 (3%)
Strand = Plus / Minus
Query: 1 attttgcccagctataggttgtaggcacctttattcaccaatcatggattactgggggc- 59
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 1122 attttgcccagctataggttgtaggcacatttattcaccaatcatggattactggaggcg 1063
Query: 60 ---------------------ggggtaaggtcgcatggcatcacttgagtctgtatgcag 98
|||||||||||||||||||||||||||||||||||||||
Sbjct: 1062 gggggggggggggggagagagggggtaaggtcgcatggcatcacttgagtctgtatgcag 1003
Query: 99 actctctcattcttgggagccagtatttagcattacactaaatagcaaaagaccaaagct 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 actctctcattcttgggagccagtatttagcattacactaaatagcaaaagaccaaagct 943
Query: 159 caatatcttatttttacagggtaaaatatgggattagtaactagaataagctaataaaag 218
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 caatatcttatttttacagggtaaaatatgggattagtaactagaataagctaataaaat 883
Query: 219 tttagtctttaggatacctaatgacaccaattctagtgctttcttctatagttacagact 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 tttagtctttaggatacctaatgacaccaattctagtgctttcttctatagttacagact 823
Query: 279 gacaaacaatgtgatcaggacatttgttcagtaagcaacaaaaggaggtttgacctcaga 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 gacaaacaatgtgatcaggacatttgttcagtaagcaacaaaaggaggtttgacctcaga 763
Query: 339 aggatcagagtcagtgtt--ctttttgaacaacacgcttggaacttctctaattagtcac 396
|||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 762 aggatcagagtc--tgtttcctttttgaacaacacacttggaacttctctaattagtcac 705
Query: 397 tccattctctgagaggagagctcctggttttttatatttggacactggtggtaacaccta 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 tccattctctgagaggagagctcctggttttttatatttggacactggtggtaacaccta 645
Query: 457 attctttaccattaaaaaa--tattttctttagaatatttattagacttacttgtgtatg 514
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 644 attctttaccattaaaaaaaatattttctttagaatatttattagacttacttgtgtatg 585
Query: 515 tgtgcatgtgtgtgcgtttatgagtataactgccatgacatgacgtgaatgtcagggaac 574
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 584 tgtgcatgtgtgtgcttttatgagtataactgccatgacatgatgtgaatgtcagggaac 525
Query: 575 cacttgtaggagttgcttctctctttgtattacgtgggctctggagagcaaacataggtc 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 cacttgtaggagttgcttctctctttgtattacgtgggctctggagagcaaacataggtc 465
Query: 635 acgagacttgttgccaacacctttatacgctgaaccattatgttggtcttaattacaatt 694
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 464 acgagacttgtcgccaacacctttatatgctgaaccattatgttggtcttaattacaatt 405
Query: 695 ccctatggtcccctcaattcatctttagtccagtcacaaat 735
|| ||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ccttatggtcccctcaattcatctttagtccagtcacaaat 364
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 735
Length of database: 1137
Length adjustment: 10
Effective length of query: 725
Effective length of database: 1127
Effective search space: 817075
Effective search space used: 817075
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no122_c24.g1 MSMg01no122_c24.g1 CHROMAT_FILE:
MSMg01no122_c24.g1 PHD_FILE: MSMg01no122_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:22 2005
(599 letters)
>mm_chr3_143114174_143115172
Length = 999
Score = 1143 bits (591), Expect = 0.0
Identities = 597/599 (99%)
Strand = Plus / Plus
Query: 1 aggatggaagacagagaaggtcaacgtcttacatgcaggtggtacactgttcacacctac 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 aggatggaagacagagaaggtcaacgtcttacatgcaggtggtgcactgttcacacctac 260
Query: 61 catcttttggagtctttatatttaactgaagaaaccttagaagaagacaattgctattag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catcttttggagtctttatatttaactgaagaaaccttagaagaagacaattgctattag 320
Query: 121 gaattatgtaagctggacactcacatgactaatgccagaagccactttcagtaaatgact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaattatgtaagctggacactcacatgactaatgccagaagccactttcagtaaatgact 380
Query: 181 tcaaacactgaaacgaaggagtaaatcccctgcctgggtaccgctttttctccttcaact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 tcaaacactgaaacgaaggagtaaatcccctgcctgggtaccgctttttctccttcacct 440
Query: 241 gccaaaagtgtaaatatttttagaaatatattatttacaaggcagggagcttttgggggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccaaaagtgtaaatatttttagaaatatattatttacaaggcagggagcttttgggggg 500
Query: 301 aagcgttgggctagtagaagaacgcagataaatgtggtagcagggagagctttatgacca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagcgttgggctagtagaagaacgcagataaatgtggtagcagggagagctttatgacca 560
Query: 361 ctccagactcaactgtcattgctttggtactttctgtcagtctgactaaatcctgtcatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctccagactcaactgtcattgctttggtactttctgtcagtctgactaaatcctgtcatc 620
Query: 421 cctcaacccggtttaaattaacaggtaatttgtaaatgtcacttcaggttaggccgatca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctcaacccggtttaaattaacaggtaatttgtaaatgtcacttcaggttaggccgatca 680
Query: 481 ttttgtttctactctaccaatgcaaagtctaggactaatttttcttgtcttcttttaata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttttgtttctactctaccaatgcaaagtctaggactaatttttcttgtcttcttttaata 740
Query: 541 ggattttcatttataaatagaattatgttctgaaaataaattacagtaagtgatgcagg 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggattttcatttataaatagaattatgttctgaaaataaattacagtaagtgatgcagg 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
