BAC Information

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BAC

Clone NameMSMg01-122F03
Chromosome3 (Build37)
Map Location 25,941,039 - 25,941,786
singlet/doubletsinglet
Overlap geneNlgn1
Upstream geneLOC100039592, LOC621017
Downstream geneLOC229152, Spata16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122F03.T7 (MSMg01no122_f03.b1)MSMg01-122F03.TJ (MSMg01no122_f03.g1)
ACCAG332212AG332213
length1,1011,108
length of high quality
(start - end)		687 (88 - 774)747 (91 - 837)
definitionCHROMAT_FILE: MSMg01no122_f03.b1 PHD_FILE: MSMg01no122_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:38 2005CHROMAT_FILE: MSMg01no122_f03.g1 PHD_FILE: MSMg01no122_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATACTTTNNNNAGCCACTGGGCGCTATAGACTCACTAAGGGAGAGGAT
CCGCGGAATTCTCATTACAGACATGCCTGTAAAACTACATTATATAATAG
TAGAAAGAAGGTGGGCCGTGGTTTAAGGAGGAACTAGAGTATTGCATTAT
TCATAAAAAGATTAGCAGAATGGAACTTCCCTGGGACATGTTTTTCTCTA
GGCCCAGAGGAATAGTATAATTAGGTATTTACTAAGAAAGCCCTGGTAGT
GGGTTTAACAATAAACTAGTATTGCAACTGGGCATATTAGCCCTTTCACC
TGGCTCCTGTAAATAGCTGACTTTACATAGGGCTGATCTTATCTCAGTTG
TAAACATTGCCTGGTTCTTGTCAGCTTTTATGTATGCATTTTCTCTGTTT
TGTGTAAAGAGCCATTATGCATCTCGATATACATTGGCTGATATATCACA
TAACTTTCTTGTTTTTCTTCTGTATTATAAGTGTGATGCTTGGTTTGAGA
AATTACACTCAGATTCAGCACTCTCTCTGGTGTTTGTGTCTGTTTGTCAC
TCTGCCAACTCCTTGCCCACCTGAGTACCAGGACCCTGATTCTCCCACAG
GTTGAGGGACAAACTGAGTCCAGTCTGTGGCAAGGTAAACCTCAAGACCT
TAGCCTTATGCCTGGGGTCAGGTGTAGAAGTAAAGAAGCAATTCCTGACA
ATCGTCTGCCCTCTGGATGTCATATGTTCACACAGAGACATAAACACACA
CACACACACACACACACACACACACACACACACACACACACACACTCTGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGATA
AATTAATAAATAAATAAATAAATAAATAAATAAATAATGTCTAACCATTA
AAGAAAAGAAAGACTTGCTGGTAAAATGCAAAGTGAAATTTCCTCCACTT
TGGGAAACGTTTTTCAGAAGCCTTTTTCTCTCCTTGCCCCGGCGGTCATT
ATTTCCCACAACCCTTTCCCTCTTGACTGGCTTGGGACTTTTGCCCAAAA
AACCTAATGAACCTAAGGGGGTTTGCCTTAATGAAAAAAAAAGAAGGGTG
C

CCTTTTTCTNNAAGAAGATGCGAGCCTGGGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTTAGCCAGAGTAAGTTACT
TCATGAGAGCTAAGATTGCCTGGACCTACCTTCTAGTTCTGCCTTGTACC
GCTGCCCTGACTTCCCTCAAGGATGAATGCACCTTGGAAACATAAAATGA
AGTAAACTGCTTTCTCCTTAAGATGCTCTTGCTCAGAGTGTTTTATAATC
AATGAATGAAACAAAATAGCTGGTGTATGTTAATATTTTTGTAAACTACT
AACTAAATATGATTGTCACTGTGCTATTCCTTTAAATAGTGACACTGGAA
TGTGTCAATGGCTTCTGGGAGGACTAAAATCACTTTATTTTGCTTTCTGT
CTAGAGAGTTTTTTTAAAATGAGAGTAAACTTATACAAAGTAAAGAATAA
ATTCAGCTTTTAGTGTGAACTTACAGAACTATGCTGCTTTCTCAAGATTA
TATTTTCTTCTTTCTTCTGTGTGGTTGGGCAGTGGAGACTAAAAGGTCAT
TCATGTTTTCTTTTTAATCAAGTCACCAAATTGCAATTAAAGAACCATAA
TTGCTGAGACAGCCCTTAATTATTTCAGTCATCAAATTAGAATATGTTTA
TTGAACACTAAGTATATGACAGACATTATGTGATTAAAGATATGGTAGGC
AAACTGCATGGTCAAACTCTAACTGGCTTTATAGAAAACTAAAGAATCCA
ACAATTAGTGAAATGATCAAAGTAAATATCTCTTATAGTCATCATTCAGG
GGTATTCCTCAACATCTCCCGGGCGGTTTCATTTTCCTAGTGTCTTATTT
TCCCAGGTCCTTGTCTGTCTTGAAGGTTTTTTCAGGAAATATTTGAGACT
GGCTTTCCATTACATTATAATGAAAAACTGACTTTCCTCTGCTTTTAATG
GCCCTGCTGACCCTTTTGGGTCTCTTGTACCCTAGAAATTTTGGAACAGG
GAATGGGAAGTGAAAAAACTTCCCAACTGGGTTACCTTTGGACAAGGTCT
CCGGTTTTTTATTGAAAAGTTCAAAATATCTAACTTTTCCTAACTCTGAA
ATTAACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_f03.g1 MSMg01no122_f03.g1 CHROMAT_FILE:
MSMg01no122_f03.g1 PHD_FILE: MSMg01no122_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:39 2005
         (747 letters)



>mm_chr3_25940683_25941830
          Length = 1148

 Score = 1377 bits (712), Expect = 0.0
 Identities = 739/748 (98%), Gaps = 1/748 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    gtaagttacttcatgagagctaagattgcctggacctaccttctagttctgccttgtacc 60
            ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 1104 gtaagttacttcatgagagctaagattgcatggtcctaccttctagttctgccttgtacc 1045

                                                                        
Query: 61   gctgccctgacttccctcaaggatgaatgcaccttggaaacataaaatgaagtaaactgc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 gctgccctgacttccctcaaggatgaatgcaccttggaaacataaaatgaagtaaactgc 985

                                                                        
Query: 121  tttctccttaagatgctcttgctcagagtgttttataatcaatgaatgaaacaaaatagc 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 984  tttctccttaagatgctcttgctcagagtgttttataatcaatgaatgaaacaacatagc 925

                                                                        
Query: 181  tggtgtatgttaatatttttgtaaactactaactaaatatgattgtcactgtgctattcc 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924  tggtgtatgttaatatttttgtaaactactaactaaatatgattgtcactgtgctattcc 865

                                                                        
Query: 241  tttaaatagtgacactggaatgtgtcaatggcttctgggaggactaaaatcactttattt 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864  tttaaatagtgacactggaatgtgtcaatggcttctgggaggactaaaatcactttattt 805

                                                                        
Query: 301  tgctttctgtctagagag-tttttttaaaatgagagtaaacttatacaaagtaaagaata 359
            |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 804  tgctttctgtctagagagtttttttttaaatgagagtaaacttatacaaagtaaagaata 745

                                                                        
Query: 360  aattcagcttttagtgtgaacttacagaactatgctgctttctcaagattatattttctt 419
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744  aattcagtttttagtgtgaacttacagaactatgctgctttctcaagattatattttctt 685

                                                                        
Query: 420  ctttcttctgtgtggttgggcagtggagactaaaaggtcattcatgttttctttttaatc 479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684  ctttcttctgtgtggttgggcagtggagactaaaaggtcattcatgttttctttttaatc 625

                                                                        
Query: 480  aagtcaccaaattgcaattaaagaaccataattgctgagacagcccttaattatttcagt 539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624  aagtcaccaaattgcaattaaagaaccataattgctgagacagcccttaattatttcagt 565

                                                                        
Query: 540  catcaaattagaatatgtttattgaacactaagtatatgacagacattatgtgattaaag 599
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564  catcaaattagaatatgtttattgaacactaagtatatgacagacattatgtgattaaag 505

                                                                        
Query: 600  atatggtaggcaaactgcatggtcaaactctaactggctttatagaaaactaaagaatcc 659
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 504  atatggtaggcaaactgcatggtcaaactctaactggctttatagaaaactgaagaatcc 445

                                                                        
Query: 660  aacaattagtgaaatgatcaaagtaaatatctcttatagtcatcattcaggggtattcct 719
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 444  aacaattagtgaaatgatcaaagtaaatatctcttatagtcatcattcaggggaattcct 385

                                        
Query: 720  caacatctcccgggcggtttcattttcc 747
            |||||||||| |||||||||||||||||
Sbjct: 384  caacatctcctgggcggtttcattttcc 357


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 747
Length of database: 1148
Length adjustment: 10
Effective length of query: 737
Effective length of database: 1138
Effective search space:   838706
Effective search space used:   838706
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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