Query= MSMg01no122_g01.b1 MSMg01no122_g01.b1 CHROMAT_FILE:
MSMg01no122_g01.b1 PHD_FILE: MSMg01no122_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:46 2005
(586 letters)
>mm_chr3_143757383_143758373
Length = 991
Score = 924 bits (478), Expect = 0.0
Identities = 561/594 (94%), Gaps = 19/594 (3%)
Strand = Plus / Minus
Query: 5 gaattcc-tgaaagagagctc-cc-t-ttaaactctagactgtaggtaaggacataaata 60
||||||| ||||||||||||| || | || ||||||||||||||||||||||||||||
Sbjct: 791 gaattccatgaaagagagctctccatatt---ctctagactgtaggtaaggacataaata 735
Query: 61 atcat--cgttaga-gtgccatagagtatcccacaacattggctgccttcgatgagttaa 117
||||| | | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 atcatgac---aaatgtgccatagagtatcccacaacattggctgccttcgatgagttaa 678
Query: 118 gttagggttgttcgccagaggaggaccatggatttcatgtggccttgtctctgttactgt 177
| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 677 ggtagggttgttcgccagaggaggaccatggatttcatgtggccttgcctccgttactgt 618
Query: 178 ga-ctggacatgccatggagttgcaacagacaaacccagcttgtcacggattgatgacag 236
|| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 617 gacct-gacatgccatggagttgcaacagacaaacccagcttgtcacagattgatgacag 559
Query: 237 tgaactgaaacaactggtcctgtcacttatctagtaagagtgattagcagcttaccagaa 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tgaactgaaacaactggtcctgtcacttatctagtaagagtgattagcagcttaccagaa 499
Query: 297 ctcaaaattccacagactctctgggatttctcagttcttaggccttcagggtccttacag 356
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 498 ctcaaaattccacaggctctctgggatttctcagttcttaggccttcagggcccttacag 439
Query: 357 aggctgcaacatacgtgatctgacatcaacaggtctcctctatgacatgacttggttctt 416
||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aggttacaacataagtgatctgacatcaacaggtctcctctatgacatgacttggttctt 379
Query: 417 ggctttttgaatt----tttcccctcggagatgcagaaatgatggtgagataggtggggt 472
|||||||||| || ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 378 ggctttttgatttcttttttcccctcggagatgctgaaatgatggtgagataggtggggt 319
Query: 473 gggtgaggctttggtgctcttcatttcacctcagctgagtgtgcaagtgtctgtgacaag 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gggtgaggctttggtgctcttcatttcacctcagctgagtgtgcaagtgtctgtgacaag 259
Query: 533 ctcaagatggttctacacaccgcagatcccactgtgccctgcatgagttggcaa 586
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 258 ctcaatatggttctacacaccacagatcccactgtgccctgcatgagttggcaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 991
Length adjustment: 10
Effective length of query: 576
Effective length of database: 981
Effective search space: 565056
Effective search space used: 565056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no122_g01.g1 MSMg01no122_g01.g1 CHROMAT_FILE:
MSMg01no122_g01.g1 PHD_FILE: MSMg01no122_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:46 2005
(301 letters)
>mm_chr3_143611933_143612633
Length = 701
Score = 574 bits (297), Expect = e-168
Identities = 300/301 (99%)
Strand = Plus / Plus
Query: 1 ggacacaccaagccagcagaggtccccaacagcccctaccccctgctccattagcacttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggacacaccaagccagcagaggtccccaacagcccctaccccctgctccattagcacttt 260
Query: 61 tgtccctaaggacaggccacctactggcgtgacataggaaggagatacccaatagacaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtccctaaggacaggccacctactggcgtgacataggaaggagatacccaatagacaga 320
Query: 121 agaaaaacaagtattactaagcatttgctaagtatagtcagtcagtgagtttctgaaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaaaacaagtattactaagcatttgctaagtatagtcagtcagtgagtttctgaaggc 380
Query: 181 ctgaccacagcttctgccagcttcagagaaggctgaggatggcaaggttcactactttga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgaccacagcttctgccagcttcagagaaggctgaggatggcaaggttcactactttga 440
Query: 241 gtcgccagaaggggaagcaacaagcatatcagctgcaaccttttcattttattatgtcac 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcgccagaaggggaagaaacaagcatatcagctgcaaccttttcattttattatgtcac 500
Query: 301 a 301
|
Sbjct: 501 a 501
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space: 202064
Effective search space used: 202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
