Query= MSMg01no122_k06.b1 MSMg01no122_k06.b1 CHROMAT_FILE:
MSMg01no122_k06.b1 PHD_FILE: MSMg01no122_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:20 2005
(791 letters)
>mm_chr3_125075454_125076645
Length = 1192
Score = 1371 bits (709), Expect = 0.0
Identities = 759/777 (97%), Gaps = 7/777 (0%)
Strand = Plus / Plus
Query: 19 gaattcaacatcttctcaattcctttta--aatttacagcccatggcatattcataatac 76
|||||||||||||||||||||| || | ||||||||||||| ||||||||||||||||
Sbjct: 219 gaattcaacatcttctcaattcatt--aggaatttacagcccacggcatattcataatac 276
Query: 77 cattttcatattcagaaggtgttgcatgatgtctagtactgacttcagttgggtaagaat 136
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 cattttcatattcagaagatgttgcatgatgtctagtactgacttcagttgggtaagaat 336
Query: 137 ggttgagtggtaactgtggatgtagtttaagtgtagtggagaaaaa-tctgttattaata 195
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 337 ggttgagtggtaactgtggatgtagtttaagtgtagtgtagaaaaaatctgttattaata 396
Query: 196 ttcatagggatgttcagctactgtcaaaatgttgtgccactagaaacagcacaggaacac 255
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 397 ttcatagggatgaccagctactgtcgaaatgttgtgccactagaaacagcacaggaacac 456
Query: 256 tgacattagaatgtgacatgctggactgtcgctcagactaagcctgcacatgtcccaagc 315
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 457 tgacattagaatgtgacatgctggactgtcgttcagactaagcctgcacatgtcccaagc 516
Query: 316 tttgatcaaaactaccaatctttgtctgcaatactaagtattcactga-cagatgctaca 374
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 517 tttgatcaaaactaccaatctttgtctgcaatactaagtattcact-agcagatgctaca 575
Query: 375 ctacaatcttgagaatttcacattttcatatacatctgtcagcacactactttggtaaat 434
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 576 ctaaaatcttgagaatttcacattttcatatacatctgtcagcacattactttggtaaat 635
Query: 435 tgacagggctaaaacaaataaatcctatttgggaattattttcaaaagtatgtttcctta 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tgacagggctaaaacaaataaatcctatttgggaattattttcaaaagtatgtttcctta 695
Query: 495 tacaattaaacttcatataccatgtacattagagcaaaataaaagaattccttagactaa 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 tacaattaaacttcatataccatgtacattagagcaaaataaaagaattccttagactaa 755
Query: 555 taaagagtaaaggaagattgtaactgctgacacgtacgcggaaagaattaatgcttctca 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 taaagagtaaaggaagattgtaactgctgacacgtacgcggaaagaattaatgcttctca 815
Query: 615 gattgaaggtgggttattcctgatgttttctagacattctgttactaagttatgacctag 674
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 816 gattgaaggtgggttattcctgatgttttctagacattctgttactaagttatgtcctag 875
Query: 675 ttatttgttttaattttttttgtttgtttatttgtttctattggttttaattttaaaatt 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 ttatttgttttaattttttttgtttgtttatttgtttctattggttttaattttaaaatt 935
Query: 735 ccaccctgataagctaccaaggctgggcttaaatttactctgcaattcaagaaggcc 791
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 ccaccctgataagctaccaaggctgggcttaaatttactctgcaattcaagaaggcc 992
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 791
Length of database: 1192
Length adjustment: 10
Effective length of query: 781
Effective length of database: 1182
Effective search space: 923142
Effective search space used: 923142
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no122_k06.g1 MSMg01no122_k06.g1 CHROMAT_FILE:
MSMg01no122_k06.g1 PHD_FILE: MSMg01no122_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:20 2005
(794 letters)
>mm_chr3_125155256_125156449
Length = 1194
Score = 1411 bits (730), Expect = 0.0
Identities = 766/778 (98%)
Strand = Plus / Minus
Query: 4 aaaacaactgggcaacagaattaacagcttttggaaccttaattatttgacctctgataa 63
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||
Sbjct: 778 aaaacaactgggcaacagaattaacagcttttggaaacataattatttgacctctgacaa 719
Query: 64 ttcaaactgaagatacatccttgtcaaatcaagaaaaagacagcatttatttgctaatga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ttcaaactgaagatacatccttgtcaaatcaagaaaaagacagcatttatttgctaatga 659
Query: 124 taaatttcaagaaatatggaagagacccttaggataaaattatagaagcaaagaatgaat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 taaatttcaagaaatatggaagagacccttaggataaaattatagaagcaaagaatgaat 599
Query: 184 aaaaatgttttaaatgttaggatagtaaacagaccataggaaggataagcaaatgctaaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 aaaaatgttttaaatgttaggatagtaaacagaccataggaaggataagcaaatgctaaa 539
Query: 244 aaatttagccaatctctggtggatatttcaaacaagacattggagttgataaaacaaaat 303
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 538 aaatttagccaatctctggtggacatttcaaacaagacattggagttgataaaacaaaat 479
Query: 304 gaactgatttaaaatcaaaatgttacaaaaacaaatgatagctactttcaaagtagtata 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gaactgatttaaaatcaaaatgttacaaaaacaaatgatagctactttcaaagtagtata 419
Query: 364 gaaatctattattaataacataaaacaaaatattaatggaataaaatagagtaatacaag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gaaatctattattaataacataaaacaaaatattaatggaataaaatagagtaatacaag 359
Query: 424 cattaagttagctcacaaagttacttcatatttctatatttttatttttagtgtatggat 483
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 358 cattaagttagctcacaaagttactttatatttctatatttttatttttagtgtatggat 299
Query: 484 gttttgcctccaagaacgtatgtagaccatgtgcatcgaatgcccatagaggtcaaaaaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gttttgcctccaagaacgtatgtagaccatgtgcatcgaatgcccatagaggtcaaaaaa 239
Query: 544 agaatgtcagatgccttgcaagcaaagttacaaaaggctgtgaggatttgaacctggttc 603
|||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 238 agaatgtcagatcccttgcaagcaaagctacaaaaggctgtgaggatttgaacccggttc 179
Query: 604 ctctgaaagacaagctagtgctcttaaccactcagtgacccctccaaatatcatggcgat 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ctctgaaagacaagctagtgctcttaaccactcagtgacccctccaaatatcatggcgat 119
Query: 664 gttttaaaaagaaagacaataccctaatcaaagcaaaaatattttgtaatattgcaacat 723
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gttttaaaaagaaagacaacaccctaatcaaagcaaaaatattttgtaatattgcaacat 59
Query: 724 ctcaaaacaaagtatgcaggcttagagaatttagagacgatatagttaagaatatttt 781
|||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 58 ctcaaaacaaaggatgcaggcttagagaatttagagactatataattaagaatatttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 794
Length of database: 1194
Length adjustment: 10
Effective length of query: 784
Effective length of database: 1184
Effective search space: 928256
Effective search space used: 928256
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
