BAC Information

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BAC

Clone NameMSMg01-122K10
Chromosome3 (Build37)
Map Location 155,152,326 - 155,153,040
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040829, Tyw3, Cryz, BC007180, Tnni3k, Fpgt, Lrrc44, EG383956
Downstream geneScp2-ps1, EG668902, LOC624519, LOC100040901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122K10.T7 (MSMg01no122_k10.b1)MSMg01-122K10.TJ (MSMg01no122_k10.g1)
ACCAG332455AG332456
length1,1541,112
length of high quality
(start - end)		---715 (69 - 783)
definitionCHROMAT_FILE: MSMg01no122_k10.b1 PHD_FILE: MSMg01no122_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:21 2005CHROMAT_FILE: MSMg01no122_k10.g1 PHD_FILE: MSMg01no122_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATTTTTNNNNGTCAGTGCGCGCTATCGACTCCTAAGGGAGAGGATCCG
CGGATTTCCAGAGTAATTACGATCCATTACAGCGCGCTCTCCTCAATCAC
CCTTGGACTAAAAGCCTTGACTGTGTTCCCGGATCTGCTGACCCCCTATT
TACTGGTCACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTTTCTTGCTCTGCCTTATCATGCGGTCTTATGACAACTCTGTCTCCAG
CATGAACTGTCGCACTACCGAGGCGTTGAGACTCCTGTTCATCCTACGCG
TAGGACCCGATACTCAACAACCTGACTGATTAATGTGCCGGGTCTGCTTG
CTGCTGATCTGAATTATTCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCGCTCTCTCTCAGACTTACGAATGATCGCACTTCCATT
TCTGACGTATACTGAACTCTGTATCGGATCGTTCAGCTCATCAGCGGCGA
CTCAAATCATCCCTCCGCTGACTGACTCACTCTGACATCTTCGCCCTAGA
TTTGATCTGCCGCCACTCATAGCTTGTATTCCAGGCCATGTGGTCTTCCG
ACTCCTCATACCGTGGCTAACAATCCTTACTTATGACCTGGTACGACCTG
CGTGACCCCATGATCGTCCGCAAAGAACGCCGCACTGTTCTCCCAGAACG
CGACCCCCCTCTATGCATGACTGATCTCACGTCCACCCCGGCTGTCATGG
ACTGTACTCATGTGAATACGCCTCTGAAAAAAGCTTTTGCACCCCGCCAG
ATGACCTTCCATCCCCATCTCCTTAGATAACAGTCCAAAAGGCGCGCACT
GGTTTTCCAACCATGTTGGGGTGGACCTGGTCCACTTGGTTCCACTTGAT
TTCCCCGCCGTATTCCGTATTTTTACCTAATCGGAATGTCTTTTTAACCC
TCAGAACAAATTAATTTCCCCTCGGGGTTGAGGTTTATTGGCATCCAAAA
CATCCCTTTAAATCCCCGCGCCCTTTTACTAAAAACCGGCTTGAAATTAG
AAAA

NCTCATGTGTAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAATCCAAGTCCCCTGGAAGAAAAGTGTGTGC
TCTTAATCATGAAGCCATCTTTCTAGTCATTGGCCCAGTCAGTTTTACAT
GACAAATTTTTCAGTTTTATCAGGAAAGATTTTTCTGCCTTAATTTTCAG
CCAGTCACACAGAATGTCCCAACGCCTTTTAACTCTGAAACTGAGTTACT
ATGTGCAGTCTATGCTGAACAACTTTGTGTTCCTTCTGCCTTTACTCAAA
ACTTCCAGCCTATATATGCATGTGTGCTCTGCGTTTCTGTCTCTGTTTCT
CAGACTATTCAAGTGTTTCCTGAGTGGAGCCCATCTTCTTGTGTATCTTG
CTTTGTTCATCATCGTCAGGGTGCTGCAAGAGGCAAACACATTGTTCCAA
AGGAAGTAATGTGGAAATATTGATCCTAAAGAGACTCAGCTTTGTCTTCC
CCGGATGCAGCATAAAGTTTTTCACAGCTCTAGATTGACAAAATAGCAAA
TAGAAAGAACAACTAACTTACCTATACCATAGGAATGAAATTAGCAAAGC
TAAATTGTAAAAAAAATGAAGAAAATATGGAATTTTCATTTATATCTAAC
TTAGTATAAAAACAGAATTATATAAGTTCAAACTATCTATACATTTTAAC
ATTAAATTCTACTTATAATTTATTTATATTTTTGTACTTTGTTTAAAGCT
ATCCATGTACACTTAATTATGCCAAAGCTTATTTGTTTAGATGTATATGT
TCTTGCTGGAAATATTTATTTCTCCAAGAAGGTAAACATGCACTTACACA
TCTTTCTCTCCTCCTCTCTCTCTCTCTTCCTAACATTTTAAAGATTTTCC
GGAAAGGAAAGAAAGGTAACCCCAAGTAAAATTATATCCCTTACCAAATA
CTTTATCTATAAGGGATGGGGACCTGCCATTAAAAAAAAGTTTTAATTTT
GTAAAAAGCACCACCCGCTTTATTTTATTTGGATGTTTCCAGGAGACCCC
TTTTTTTCTCCCACACTTGGTAAAAATGGCCAACCTAATCAAGGTTTTTC
TCCATTTAATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_k10.g1 MSMg01no122_k10.g1 CHROMAT_FILE:
MSMg01no122_k10.g1 PHD_FILE: MSMg01no122_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:21 2005
         (715 letters)



>mm_chr3_155152126_155153240
          Length = 1115

 Score = 1344 bits (695), Expect = 0.0
 Identities = 710/715 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatccaagtcccctggaagaaaagtgtgtgctcttaatcatgaagccatctttctagtc 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatccaagccccctggaagaaaagtgtgtgctcttaatcatgaagccatctttctagtc 260

                                                                       
Query: 61  attggcccagtcagttttacatgacaaatttttcagttttatcaggaaagatttttctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attggcccagtcagttttacatgacaaatttttcagttttatcaggaaagatttttctgc 320

                                                                       
Query: 121 cttaattttcagccagtcacacagaatgtcccaacgccttttaactctgaaactgagtta 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttaattttcaggcagtcacacagaatgtcccaacgccttttaactctgaaactgagtta 380

                                                                       
Query: 181 ctatgtgcagtctatgctgaacaactttgtgttccttctgcctttactcaaaacttccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctatgtgcagtctatgctgaacaactttgtgttccttctgcctttactcaaaacttccag 440

                                                                       
Query: 241 cctatatatgcatgtgtgctctgcgtttctgtctctgtttctcagactattcaagtgttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctatatatgcatgtgtgctctgcgtttctgtctctgtttctcagactattcaagtgttt 500

                                                                       
Query: 301 cctgagtggagcccatcttcttgtgtatcttgctttgttcatcatcgtcagggtgctgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctgagtggagcccatcttcttgtgtatcttgctttgttcatcatcgtcagggtgctgca 560

                                                                       
Query: 361 agaggcaaacacattgttccaaaggaagtaatgtggaaatattgatcctaaagagactca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaggcaaacacattgttccaaaggaagtaatgtggaaatattgatcctaaagagactca 620

                                                                       
Query: 421 gctttgtcttccccggatgcagcataaagtttttcacagctctagattgacaaaatagca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctttgtcttccccggatgcagcataaagtttttcacagctctagattgacaaaatagca 680

                                                                       
Query: 481 aatagaaagaacaactaacttacctataccataggaatgaaattagcaaagctaaattgt 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 aatagaaagaacaactaacttacctataccataggaatgaaattagcaaagctaaactgt 740

                                                                       
Query: 541 aaaaaaaatgaagaaaatatggaattttcatttatatctaacttagtataaaaacagaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaaaaaaatgaagaaaatatggaattttcatttatatctaacttagtataaaaacagaat 800

                                                                       
Query: 601 tatataagttcaaactatctatacattttaacattaaattctacttataatttatttata 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tatataagttcaaactatctatacattttaacattaaattctacttataatttatttata 860

                                                                  
Query: 661 tttttgtactttgtttaaagctatccatgtacacttaattatgccaaagcttatt 715
           ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 861 tttttctactttgtttaaagctatccatatacacttaattatgccaaagcttatt 915


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 715
Length of database: 1115
Length adjustment: 10
Effective length of query: 705
Effective length of database: 1105
Effective search space:   779025
Effective search space used:   779025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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