BAC Information

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BAC

Clone NameMSMg01-122L08
Chromosome3 (Build37)
Map Location 83,604,620 - 83,605,360
singlet/doubletsinglet
Overlap geneLOC633522
Upstream geneEG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2
Downstream geneTlr2, D930015E06Rik, Mnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122L08.T7 (MSMg01no122_l08.b1)MSMg01-122L08.TJ (MSMg01no122_l08.g1)
ACCAG332496AG332497
length1,2471,221
length of high quality
(start - end)		762 (38 - 799)762 (75 - 836)
definitionCHROMAT_FILE: MSMg01no122_l08.b1 PHD_FILE: MSMg01no122_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:28 2005CHROMAT_FILE: MSMg01no122_l08.g1 PHD_FILE: MSMg01no122_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTATTCNNNNNGTCAACTGGGCGCTATAGACTCCTATAGGGAGAGGATC
CGCGGAATTCCCTTGATGGCTTTGGCCTTCAGATCCAAGGCTGCACTGAC
AGAATTTCTGATTCACCTGGAACTAAGTTCACAGGTGTTTCTGATATGGG
CTTTCCTGAGATCACACTTGGGAAACCTCTGGTTTGCAGGCAAGCATGAC
CTAAATGCAGAGGCTCTGGCAGAGGAGCAGGTCCTCTGTGGGTACTCTGT
GGGAATGAGCATTGCACTGGTTATCAAAGACTTGTCTGTGAAAGATAAAG
GCTTGTCTTAGACCAGTATTTCATTTTAATTTTTCCATCAGAAACATTAT
TTCCTATGCAGCCCAGGGTTTAGAGAAATTTTCAGTACAGTATGTTACAT
AAGTTTAGGTGATTTTTTAAAATATTTTAGTGAGATAATCTTGTTTTTTT
TAAACAGATCCATCAAAATTGTACATCGCTATTATCTTATCAATAAATAA
AATTAAATAAAATAAAAACCGCACCTCCTTGGCCCCTGGTGGGTTACCCA
TGAATGGCTTTACACCCCTGAACATATAGGTAGCACTACCTGGACTCAGT
GGGGCTTGGTGTTGGCCATTTCTTTTTAATAAAGGACGTAAGATGGGGAT
ATGGATGATACTCAGAGTGGGAGGGAGAGCGGGATAGATGCACTAAGTGC
CTCATACACCCCAATGAGCATCTCAAGAAAAAATAACATCATAACAAAAG
AAAAACCCACTTTTTTTATTTTTTTGGTTTTTTGTTTGTTGTTTGTTTGT
TTTGCTTTGTTTTCCCTTCCCCCACCCTTCTTCTTCTTTTCTCCCATTCT
TTTCTCTTATCCCTCACCTTTCTATTCTTTTCTCTTTTTTATTTTCTTTC
CATCTTTTTCTTTCCTTTTTTTTTCACTTCTTTTCCTCTTCTTTACCTTT
TTATCTTCTTCTCTTTCTATTCTTTTCTCAATCTNTTTTCCTCTCTCTCC
CCCCTCATCCTTACTTTTTCTTTTTTTATCTCTTCTATCTTTTCTCTTCC
TCTCTTCNTTCTTATATTTTTTCTTTTTTACTATTACTACTCCTTTTTTC
TTCTACTTTTTTCCTCTTTTCTTTTCTTTCTCTATTCTCCTTTCCATTTC
ATCTCTTTTTTCTATCTCTTCTCTATTTCTCTTCCTCACATCTTCATCTC
ACTTCCTTTCTTTATCTATCATCTTCTAACTTCTTCTTTTTATCTTC

TTTTTGGAGATGGNTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTTCACACCCTTAAGCCCCTTACCCCATAAAA
ACCCCTAGCTTTTGAGCCTCGTGGCCGACATCCGTTATCTCCTGTGTGGG
ATGCATGTCGGTCCGGAGCTCCGTAATTAAACGACCTCATGTAATTACAT
CAAGATGGTCCTTCATGATTTTTTTTGGGTGCACGCTGAATCTGGAATTG
AGTGGGGGGTTCCCAATAGGTTCTATCATTTGGAGGTCCCACTGAGATCT
GCGTGACACCTGGGAACCCTGAAGGACCCCTTGGAGGTACGTTTGTTTGT
GTGAGTCTTATATGTTATCTGATGTCTAAGTGTCTAAGTGTGGCACCTCT
GAATTTGTGTCTTGGTTTTTCAGTTCTGAGATTGTGGGTTTGAGTCCCAC
CTGTGTTTCCAGTTCTGGTATTCTGTATTCTGGCAGCTGCCACTGTGGAC
TGTAAGGACCTAGTGGCTGTGGGAGAAAGATGTTCTATGGCTCCACAGGC
TGCAACCTTGGAAGATGTTCCAAGGGTGACCCTGGAGGAAGTGCCCAGGA
TGAGGTACAGTTAGAAAGGACTGGCTGTCCTCTGGCAGAGTGAGGGAGAT
CAGGTCCTCTCTCTGCCAGAGTGGGAGTGGATGTGGAATCCCACCCCGTC
AGGAAGGGAGTCGATGTGGAATCCGACCCCTGTCAGGAAAGAGGTCGATG
TGAAAACCGACCCGGTTAGGAAGTAGCGTTTGGCTGGTTGTATAAGTCCA
GGCGCGGACGAGTGTGCTTAGATATATACTGGTGTCTTTTTCTCTGTTGC
TATCTTGTTTTTGTTTGTGTTTGTCCTGGGACACAGAACTTGTCATTGGA
AGTAAAGTGGAATCCCTTCCTGGCTGTCTGTCTGATAGGTCTATGTGGCT
GTCCTGTCTTGTTCACTTGGGGTGTCCTCCATTGGACCCCGTTCTGAATC
CGGTTTTGTTTTGGCTTTTTTCTGGTTTAAAACTTGGTTTGTTCCTCCAC
TTTTTTCACTCTCTCATCTTTGTTATTCTGTTATATTTCTTCTATACTTC
TTTTGTCTCCCTCTTCCTCACTTACTCTCCCTTCTTGTACTTCTATTTCT
ATTTACTACTTTTCTTATTATTCTTCCTACTTATTTCTCTTTTACCTCTT
TTCTCTTTCTTTTCCTCTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_l08.b1 MSMg01no122_l08.b1 CHROMAT_FILE:
MSMg01no122_l08.b1 PHD_FILE: MSMg01no122_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:28 2005
         (762 letters)



>mm_chr3_83604404_83605565
          Length = 1162

 Score = 1321 bits (683), Expect = 0.0
 Identities = 729/747 (97%), Gaps = 8/747 (1%)
 Strand = Plus / Plus

                                                                       
Query: 18  gaattcccttgatggctttggccttc-agatccaaggctgcactgacagaatttctgatt 76
           |||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||
Sbjct: 217 gaattcccttgatggctttggccaaccagatccaaggctgcactgacagaatttctgatt 276

                                                                       
Query: 77  cacctggaactaagttcacaggtgtttctgatatgggctttcctgagatcacacttggga 136
           ||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 cagttgaaactaagttcacaggtgtttctgatatgggctttcctgagatcacacttggga 336

                                                                       
Query: 137 aacctctggtttgcaggcaagcatgacctaaatgcagaggctctggcagaggagcaggtc 196
           |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 337 aacctctgctttgcaggcaagcatggcctaaatgcagaggctctggcagaggagcaggtc 396

                                                                       
Query: 197 ctctgtgggtactctgtgggaatgagcattgcactggttatcaaagacttgtctgtgaaa 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ctctgtgggtactctgtgggaatgagcattgcactggttatcaaagacttgtctgtgaaa 456

                                                                       
Query: 257 gataaaggcttgtcttagaccagtatttcattttaatttttccatcagaaacattatttc 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gataaaggcttgtcttagaccagtatttcattttaatttttccatcagaaacattatttc 516

                                                                       
Query: 317 ctatgcagcccagggtttagagaaattttcagtacagtatgttacataagtttaggtgat 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ctatgcagcccagggtttagagaaattttcagtacagtatgttacataagtttaggtgat 576

                                                                       
Query: 377 tttttaaaatattttagtgagataatcttgttttttttaaacagatccatcaaaattgta 436
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ttttaaaaatattttagtgagataatcttgttttttttaaacagatccatcaaaattgta 636

                                                                       
Query: 437 catcgctattatcttatcaataaataaaattaaataaaataaaaaccgcacctccttggc 496
           |||| |||||||||||||||||||||||||     |||||||||||||||||||||||||
Sbjct: 637 catcactattatcttatcaataaataaaat-----aaaataaaaaccgcacctccttggc 691

                                                                       
Query: 497 ccctggtgggttacccatgaatggctttacacccctgaacatataggtagcactacctgg 556
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ccctggtgggttacccatgaatggctttacacccctgaacatataggtagcactacctgg 751

                                                                       
Query: 557 actcagtggggcttggtgttggccatttctttttaataaaggacgtaagatggggatatg 616
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 actcagtggggcttggtgttggccatttctttttaataaaggacgtaagatggggatatg 811

                                                                       
Query: 617 gatgatactcagagtgggagggagagcgggatagatgcactaagtgcctcatacacccca 676
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 gaggatactcagagtgggagggagagcgggatagatgcactaagtgcctcatacacccca 871

                                                                       
Query: 677 atgagcatctcaagaaaaaataacatcataacaaaagaaaaacccactttttttattttt 736
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 872 atgagcatctcaagaaaaaataacatcataacaaaagaaaaacccactttttt-attttt 930

                                      
Query: 737 tt-ggttttttgtttgttgtttgtttg 762
           || ||||||||||||||||||||||||
Sbjct: 931 tttggttttttgtttgttgtttgtttg 957


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 762
Length of database: 1162
Length adjustment: 10
Effective length of query: 752
Effective length of database: 1152
Effective search space:   866304
Effective search space used:   866304
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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