Query= MSMg01no122_n12.b1 MSMg01no122_n12.b1 CHROMAT_FILE:
MSMg01no122_n12.b1 PHD_FILE: MSMg01no122_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:46 2005
(375 letters)
>mm_chr3_134914928_134915702
Length = 775
Score = 667 bits (345), Expect = 0.0
Identities = 363/369 (98%), Gaps = 2/369 (0%)
Strand = Plus / Plus
Query: 1 ctgaccttaaaagacagtgatagagaaaaagacttaacaagtcctggga-ttgagtgggt 59
|||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||
Sbjct: 201 ctgaccttaaaagacagtgatagagaaaaagagaaaacaagtcct-ggagttgagtgggt 259
Query: 60 gcagccccgagaggaaaggtagggccagagctgagactccgggtcctttggccctcttgt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gcagccccgagaggaaaggtagggccagagctgagactccgggtcctttggccctcttgt 319
Query: 120 acccaggcatgctgtagagctcgtttctgagtgcggatttttcttcaagtgtattaaaag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 acccaggcatgctgtagagctcgtttctgagtgcggatttttcttcaagtgtattaaaag 379
Query: 180 taattactcattaagaagagataatgaaatgcataactaggtgctgaggattttggtatc 239
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 380 taattactcattaagaagagataatgaaatgcataactaggtgctgagggttttggtatc 439
Query: 240 agaagtggttggttttaaaaaggttttgggtagagtaaagctcaaaaacttgaatttgag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agaagtggttggttttaaaaaggttttgggtagagtaaagctcaaaaacttgaatttgag 499
Query: 300 agaatttcagattatggatttttaaccaataaagtcaagactacaaacactgtaaaatct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agaatttcagattatggatttttaaccaataaagtcaagactacaaacactgtaaaatct 559
Query: 360 gaaacactg 368
|||||||||
Sbjct: 560 gaaacactg 568
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space: 280356
Effective search space used: 280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no122_n12.g1 MSMg01no122_n12.g1 CHROMAT_FILE:
MSMg01no122_n12.g1 PHD_FILE: MSMg01no122_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:46 2005
(270 letters)
>mm_chr3_135062372_135063041
Length = 670
Score = 437 bits (226), Expect = e-127
Identities = 252/270 (93%), Gaps = 16/270 (5%)
Strand = Plus / Minus
Query: 1 ccagaagtagaaatgctagatcacatgcaagttttgtttaatggttagagtat----gag 56
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 577 ccagaagtagaaatgctagatcacatgcaagttttgtttaatggttagagtatatgagag 518
Query: 57 aacatgttcatacatgcacacgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 116
||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 517 aacatgttcatacatgcacacga------------gtgtgtgtgtgtgtgtgtgtgtgtg 470
Query: 117 tgtagaacaagaagccaaaggaacagctcgtgatcatacatgattgagagagaacaagag 176
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tgtagaacaagatgccaaaggaacagctcgtgatcatacatgattgagagagaacaagag 410
Query: 177 aacacatctatacttgtgtctttgtgcaggccagagctgtcaaccttgtttttttgttgt 236
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aacacatctatacttttgtctttgtgcaggccagagctgtcaaccttgtttttttgttgt 350
Query: 237 ttttgtttttatagtctctctgactagcct 266
||||||||||||||||||||||||||||||
Sbjct: 349 ttttgtttttatagtctctctgactagcct 320
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space: 172521
Effective search space used: 172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
