Query= MSMg01no122_p15.b1 MSMg01no122_p15.b1 CHROMAT_FILE:
MSMg01no122_p15.b1 PHD_FILE: MSMg01no122_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:03 2005
(651 letters)
>mm_chr3_73429551_73430602
Length = 1052
Score = 946 bits (489), Expect = 0.0
Identities = 531/545 (97%), Gaps = 1/545 (0%)
Strand = Plus / Minus
Query: 108 agttgaagcagccatccagagtttagaaagaactagaaaggctgagctcattcagcagca 167
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1052 agttgaagcagccatccagagttcagaaagaactagaaaggctgagctcattcagcagca 993
Query: 168 agtcccagaggctgaaaacactttaggtataggttgcgtatagtataaaagcttccagac 227
|||||||||||||||||||||| |||| |||| |||| ||||||||||||||||| ||||
Sbjct: 992 agtcccagaggctgaaaacactataggcatagattgcatatagtataaaagcttctagac 933
Query: 228 ttaggcctaggtaaggagatggaatcagtaagcctctgagattacagttacatcaggcaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932 ttaggcctaggtaaggagatggaatcagtaagcctctgagattacagttacatcaggcaa 873
Query: 288 ataaacgttacttttatagacatcctaacctttgaacacttcagtattacattgttaaag 347
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 872 ataaacgttacttttataggcatcctaacctttgaacacttaagtattacattgttaaag 813
Query: 348 ctgtgctgcagaagatgcttagttcaacatgtgggcagttatcataga-ttttcacagtg 406
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 812 ctacactgcagaagatgcttagttcaacatgtgggcagttatcatagatttttcacagtg 753
Query: 407 aagttgaagtgtgatcacatgcagactgaagtttgacttagttggagaaagcagttacca 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 aagttgaagtgtgatcacatgcagactgaagtttgacttagttggagaaagcagttacca 693
Query: 467 ctatcagataaaggagccacaagctataagtgccagcaaaaagaacaagaggtctgtttc 526
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ctatcagacaaaggagccacaagctataagtgccagcaaaaagaacaagaggtctgtttc 633
Query: 527 cctgtatagtctatggagaatagagggaggatgtttatcttaaactttcattgtgatcca 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 cctgtatagtctatggagaatagagggaggatgtttatcttaaactttcattgtgatcca 573
Query: 587 atgaaatatggcagaatgaatttcgtttaagcccaacattttttctattgcaacagcttt 646
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 572 atgaaatatggcagaatgaatttcatttaagcccaacattttttctattgcaacagcttt 513
Query: 647 tgtaa 651
|||||
Sbjct: 512 tgtaa 508
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1052
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1042
Effective search space: 667922
Effective search space used: 667922
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no122_p15.g1 MSMg01no122_p15.g1 CHROMAT_FILE:
MSMg01no122_p15.g1 PHD_FILE: MSMg01no122_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:03 2005
(671 letters)
>mm_chr3_73279961_73281030
Length = 1070
Score = 1205 bits (623), Expect = 0.0
Identities = 665/693 (95%), Gaps = 23/693 (3%)
Strand = Plus / Plus
Query: 1 acccttctcttccttctgggttgtcatttccagccttg---------------------- 38
||||||||||||||||||||||||||||||||||||||
Sbjct: 179 acccttctcttccttctgggttgtcatttccagccttgctttgagggcttgtttccaaat 238
Query: 39 ttacaatgtttggcagatatccttgtttatgtggataatagagactgaatactagtcttc 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ttacaatgtttggcagatatccttgtttatgtggataatagagactgaatactagtcttc 298
Query: 99 tagcttctgctagacacactttatccactaaatgatttccacatgcttagctatagttct 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tagcttctgctagacacactttatccactaaatgatttccacatgcttagctatagttct 358
Query: 159 taagaacaataggatgttatgattaagtcttgtaatttttaaaacaaacagaaactttta 218
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 359 taagaacaataggatgttatgattaagtcttgtaatttttaaaacaaatagaaactttta 418
Query: 219 gcactaattgtaaaagaacagaataaaaactccttttataatctcagagaaggagatagt 278
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 419 gcactaattgtaaaagaacagaataaaaactcctttcataatctcagagaaggagacagt 478
Query: 279 tttggagttgatgtaatgtgattttccatgagaaaagttgtagttaatgtgtaattttta 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tttggagttgatgtaatgtgattttccatgagaaaagttgtagttaatgtgtaattttta 538
Query: 339 ttgcatgcaatttgatccttttatttggtcttgaattttatcagctgcttttattttctg 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ttgcatgcaatttgatccttttatttggtcttgaattttatcagctgcttttattttctg 598
Query: 399 taaatggaaagagaaaacaacccagagaaagccatgttagaaagtactggtttgctccag 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 taaatggaaagagaaaacaacccagagaaagccatgttagaaagtactggtttgctccag 658
Query: 459 tcagtggttgctattcgtcacctgaagatagactcaacgttagccaaaaggcagaggagt 518
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 659 tcagtggttgctattcgtcacctgaagatagactcaatgttagccaaaaggcagaggagt 718
Query: 519 aatagaacctgtactggaaagaatctgaaactcctcagacatattgcttcaaggaggata 578
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 aatagaacctttactggaaagaatctgaaactcctcagacatattgcttcaaggaggata 778
Query: 579 ccatcacaaatagaaatactgttatcattttgctttagagcatgctggtaattttctttt 638
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 779 ccatcacaaatagaaatactgttatcattttgctttagagcatgctggtaattt-ctttt 837
Query: 639 caaaactaaaacacttaactgtagtgaaggagt 671
|||||||||||||||||||||||||||||||||
Sbjct: 838 caaaactaaaacacttaactgtagtgaaggagt 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1070
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1060
Effective search space: 700660
Effective search space used: 700660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
