BAC Information

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BAC

Clone NameMSMg01-123A21
Chromosome3 (Build37)
Map Location 151,243,341 - 151,243,649
singlet/doubletsinglet
Overlap genenone
Upstream geneEltd1
Downstream geneIfi44, H28, Ptgfr, LOC100040741, LOC100040597, LOC676548, Gipc2, Dnajb4, Fubp1, Nexn, C030011O14Rik, Usp33, Zzz3, Ak5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123A21.T7 (MSMg01no123_a21.b1)MSMg01-123A21.TJ (MSMg01no123_a21.g1)
ACCAG332759AG332760
length1,1971,208
length of high quality
(start - end)
328 (134 - 461)328 (125 - 452)
definitionCHROMAT_FILE: MSMg01no123_a21.b1 PHD_FILE: MSMg01no123_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:14 2005CHROMAT_FILE: MSMg01no123_a21.g1 PHD_FILE: MSMg01no123_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCGAATTNNNNNNNGAACAGTGGGCGCTATAXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCATGTATTATTCATTCTCTTTTCCTAGAAGAAAGAAC
TAAAACAAAGGAAATGGAATTCCTTAATATACACTACCTGTCTGGGAATG
TTTGCCAAAATAGGTATGCTGACAAAGAAGGGATTAGAGGTGGTGCTTAC
AGGAAAGGAATGAGAGCTGAGATGGAATTCTAAATAAATAAAAATAATAA
TCTATTAATATGCTAATAACCATGATCCACTAAAGAAGAAAAATAGATTG
TGCATGAAAGAGATTGTGGAAATGGTGAGATGATAAACTGACTGAGAAGA
TAAAATAAAATGAAATTGACTAATCAAGATTCACTTTTAAGCAGAGCATC
ATCTAGTTTTAGGAGGGACATGGAGTCTAGGGCACAATTGAAACCAACGA
GGATACGAAGTCTTATTTTCAATGACGATATGCAGTCATCAGAAGGCCAA
TGAAAATACACAGTCAGAAGGCCAATGAGGATATGCAGTCATCAGAAGGC
CAATGAGGATACGAAGTCAGAAGGCCAATGAGGATATGCAGTCGTCAGAA
GGCCAATGAAGATATGCAGTCATCAGAAGGCCAATGAGGATATGCAGTCA
TCAGAAGGCCAATGAGGATATGCAGTCATCAGAAGGCCAATGAGGATATG
CAGTCATCAGAAGGCCAATGAGGATATGCAGTCATCAGAAGGCCAATGAG
GATATGCAGTCATCAGAAGGCCAATGAGGATATGCAGTCAGAAGGCCAAC
GAGGATATGCAGTCATCAGAAGGCCCATGAGGATATGCAGTCATCAGAAG
GCCAATGAGGATATGCCGTCATCAGAAGGCCAATGAGGATATGCAGTCCT
CAGAAGGCCAATGAGGATATGCCGTCAGAAGGTCCATGAGGATATGCAGT
CTTCAGAAGGCCATTGAGGATATGCAGCCCTCCGAAGGCCAATGAAGAAT
TGCATCCCTTATAAGGCCCATGAAGGATATGCCGTCCTTCACAAGGCCAT
TGAGGATTTGCCCTCTTTCAAAAGGCCCAATGGGTATATTCTAGTCCTTC
AAAAGGGTCTATTGAGGATATGCTCCTCCTCTCAAAAGCCCCAGGAGGAA
ATTGTTGCCTCTCTCTAAGAGCCAATTGAGAAAAATTCCGTTTCTCC
CTTTTTCTTCATGGTAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTTATAAGGAGACCTCCAAATAAGACTCTC
CATGTTTGGTTCTGTTACCCTGCCTCTGTTCCTATGTGCTGCAGGAGAAA
GCCTCTCTGATTATGACTGCATAAGTCACTGATCTATTAGTAAAGCAGAA
TGTCATTAGGCATAATTGTGTTAATTTTTTTTAGGCTAATAGTGTTTGGT
TTTACCCTAGGTCTCTGAACTATCTTGTCTCTGGTACTTGGTTACCCAGG
CAGTGTAAGTTATGGGTTGCTTTTCATGGAGTGTGCACTAAGTCAAATCA
GACTTTAGTTGGCTACTCATTCAAACTCTGTGCCATCATTGCCCTAACAC
ATTTTGTAGGCAGGGCATATTGCAGGTCAAACACCAATTGTTTTTGTTTT
GGTATTTTGGAAAGTACCTTCCCTTACCAAACAGAGTAGAATGTAGGAGT
GAGGCTCCATGCAGGCACCAGCTATTCTTTTCCATGTTCATTGAGTTCAT
TGTGTAGGGGATGTCTTCTGCAAGAGGGTCCTACTGTCAGTTTGTAGAGA
ACAACCCCTTGTCTTAGCAACAGCCTGTGTTGTTTAGAGATTTCCATGGG
AGCCCGTTGGCCAACAACTCAACTGAATGCAAGTCAGTTCTGATACTGGA
GGCCTCACCTGATTACAGAAGATACCAGGTAGAACCCCTCATCTCCCATT
GCTAGGAGCTCTCATTGGGGTCACCCTTCCCAGATTCCAGGAAGTTTCTA
CTGCACTAGGTTTCCACACCAATTCCCAAATATTCCCTAGTTCTTGGCTC
TCCCACACTCTCTCATACCACTTCCATTTTTCCCCCCACCGAATCCCCCT
CTGTCCCCACCTGACCTTCAGTCTGTCCTGTAAAATCCATTTCTATTTTT
TCCCTCCCAGGGAAAATCCCCCCTCTTTACCCCAACATCACGTGGTTTTT
TGGAATTATAGCCTTTGAAATCCCTTTTCCCTAAGGGCCAATTATTCCCC
CTCATTGAATGGAATCTCCCTTCCAGGGATTTCTCTTTCCGGCAATTTGG
GGTTAATCTTCTCTCCCGCCATCAATCTTTTTTTTCTCCCGGTTCTACCC
CATCTTTTCCCCCCCTCAACCTCCTCACTGATCAACATTTCTTTTTCTCT
TCATAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_a21.b1 MSMg01no123_a21.b1 CHROMAT_FILE:
MSMg01no123_a21.b1 PHD_FILE: MSMg01no123_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:14 2005
         (328 letters)



>mm_chr3_151243141_151243863
          Length = 723

 Score =  565 bits (292), Expect = e-165
 Identities = 307/314 (97%), Gaps = 5/314 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctacctgtctgggaatgtttgccaaaataggtatgctgacaaagaagggattagaggtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctacctgtctgggaatgtttgccaaaataggtatgctgacaaagaagggattagaggtgg 260

                                                                       
Query: 61  tgcttacaggaaaggaatgagagctgagatggaattctaaataaataaaaataataatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcttacaggaaaggaatgagagctgagatggaattctaaataaataaaaataataatct 320

                                                                       
Query: 121 attaatatgctaataaccatgatccactaaagaagaaaaatagattgtgcatgaaagaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attaatatgctaataaccatgatccactaaagaagaaaaatagattgtgcatgaaagaga 380

                                                                       
Query: 181 ttgtggaaatggtgagatgataaactgactgagaagataaaataaaatgaaattgactaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    ||
Sbjct: 381 ttgtggaaatggtgagatgataaactgactgagaagataaaataaaaggaaatt----aa 436

                                                                       
Query: 241 tcaagattcacttttaagcagagcatcatctagttttaggagggacatggagtctagggc 300
           |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 437 tcaagattcacttttaagcagagcatcatctaatttt-ggagggacatggagtctagggc 495

                         
Query: 301 acaattgaaaccaa 314
           ||||||||||||||
Sbjct: 496 acaattgaaaccaa 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 723
Length adjustment: 9
Effective length of query: 319
Effective length of database: 714
Effective search space:   227766
Effective search space used:   227766
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)