Query= MSMg01no123_c08.b1 MSMg01no123_c08.b1 CHROMAT_FILE:
MSMg01no123_c08.b1 PHD_FILE: MSMg01no123_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:28 2005
(380 letters)
>mm_chr3_123542676_123543455
Length = 780
Score = 644 bits (333), Expect = 0.0
Identities = 372/391 (95%), Gaps = 12/391 (3%)
Strand = Plus / Plus
Query: 1 ctgccaacactgggagactttagaaattagatacctattaatatcagacatcctagaata 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 191 ctgccaacactgggagactttagaaattagatacatattaatatcagacatcctagaata 250
Query: 61 gttaccaaaaaaatcaaagtatgagtctggacctagcaggttgtcacactcctctttgca 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gtta-caaaaaaatcaaagtatgagtctggacctagcaggttgtcacactcctctttgca 309
Query: 121 gtgtagtcaggccattataagaaacagagccaatggtgaagcgtctttactgtgctgggc 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 310 gtgtagtcaggccattataagaaacagagccaatggtgaagcatctttactgtgctgggc 369
Query: 181 ctgga-------ggc----cagcaaagcggcatctgtttgtaaggcaaggtcagatttaa 229
||||| ||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 370 ctggaggagcatggcgcttcagcaaagcggcatttgtttgtaaggcaaggtcagatttaa 429
Query: 230 agggctccttaaagacaccaagagtggtattaaaacaaacaaacaaggaaaaacagaaca 289
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 430 agggctccttaaagacaccaagagtggtattaaaacaaacaaataaggaaaaacagaaca 489
Query: 290 ataaggaaatgttatgtttaataaagactaacatgaacagtaacaaaagctgtagggaaa 349
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 490 ataaggaaatgttttgtttaataaagactagcatgaacagtaacaaaagctgtaggaaaa 549
Query: 350 tctgtaagtaagaaaccaagaaaagattatg 380
|||||||||||||||||||||||||||||||
Sbjct: 550 tctgtaagtaagaaaccaagaaaagattatg 580
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space: 286041
Effective search space used: 286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no123_c08.g1 MSMg01no123_c08.g1 CHROMAT_FILE:
MSMg01no123_c08.g1 PHD_FILE: MSMg01no123_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:28 2005
(330 letters)
>mm_chr3_123657395_123658121
Length = 727
Score = 607 bits (314), Expect = e-178
Identities = 325/330 (98%), Gaps = 3/330 (0%)
Strand = Plus / Minus
Query: 1 ataactaacgaatgttttttttttttgttcatttaagtaatggaacaaacttagatcttc 60
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 527 ataactaacgaatg---tttttttctgttcatttaagtaatggaacaaacttagatcttc 471
Query: 61 atgatgtcatttgagagctgtttgcctcagtttacaaaagttcacttttgttctctagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 atgatgtcatttgagagctgtttgcctcagtttacaaaagttcacttttgttctctagtt 411
Query: 121 aacaatttttccctggccttctaggtactctgccatttgtattttgatgtattatattaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aacaatttttccctggccttctaggtactctgccatttgtattttgatgtattatattaa 351
Query: 181 taatttgtgatttatgtttttgtttaactaggcattgttaaaggtgaccttttgatttga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 taatttgtgatttatgtttttgtttaactaggcattgttaaaggtgaccttttgatttga 291
Query: 241 ttgtttagctgactttggagctaataagacaaagaatttgcaatctaatgaaccatgcac 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 290 ttgtttagctgactttggagctaataagacaaagaatttgaaatctaatgaaccatgcac 231
Query: 301 atggaatgatgatggatggcttacttggga 330
||||||||||||||||||||||||||||||
Sbjct: 230 atggaatgatgatggatggcttacttggga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 727
Length adjustment: 9
Effective length of query: 321
Effective length of database: 718
Effective search space: 230478
Effective search space used: 230478
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
