BAC Information

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BAC

Clone NameMSMg01-123J18
Chromosome3 (Build37)
Map Location 30,710,295 - 30,710,572
singlet/doubletsinglet
Overlap geneTloc1
Upstream geneLOC100040676, Evi1, Mds1, LOC100040727, LOC100040734, LOC100040749, Arpm1, Mynn, Lrrc34, 4930558O21Rik, E230002P03Rik, Samd7
Downstream geneGpr160, Phc3, LOC100040809, Prkci, Skil, Cldn11, Slc7a14, LOC625125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123J18.T7 (MSMg01no123_j18.b1)MSMg01-123J18.TJ (MSMg01no123_j18.g1)
ACCAG333171AG333172
length1,3001,288
length of high quality
(start - end)
269 (137 - 405)332 (131 - 462)
definitionCHROMAT_FILE: MSMg01no123_j18.b1 PHD_FILE: MSMg01no123_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:34 2005CHROMAT_FILE: MSMg01no123_j18.g1 PHD_FILE: MSMg01no123_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCCCNCGCCATTGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGACACACTTATCCCCCCTGTTGTATCTATAAGAAGCAGCGTCT
CCTAGGGCTGGGCGTTTGAGACTCTGCAATAGGAACCACTCAGATATCTT
AAGTGTTAAGCATATCCCTGAGTACTAGATACTTCACAGGTGCTATAGGA
AAATATAGTGCAATTCTCTGCAAGGAAGCTTTTTTTTAAAAAAAGATTTA
TTATATGTAAGTACACTGTAGTCTGGAGACCATGGGCATTTGACTTGAGC
CTTCAGAACTGACTGGCAGATTGCCCATTATACCAGGAAAGAGAGATAGA
TCTATTAGGGAAGAAAGCAAGCTGCCATCTTGAAAAGGCCAGGCTGTGCA
TGTGCTTGTGCACACAAACACACACACACACACTCACACACACACACACA
CACTAGATTTTCTGTCCCTCCAGACTTAAAATTGCACATTTCCCTTTTAT
TAAACATAGGTTTTTAAGCTGAATATGGTGGTGTACACCTTTAATCCTAG
CTCTTGAGAGACAGATCTCTGCGAGTTTGAGGCCAGCCCCTGGTCTGTAT
AGTCCAGTCAGTTCAGGCTAGTCAGGGCTGTTATATACAGAACACTCCAT
TCTAACAGGGTGTGGCGGATGTTACAGGTTTCTCCTCTCTATCTTCTTCT
TTCCTCCCCTCCTCTCCCCTCCCCATCCCCCCTCTTCTCCCCCCCTCTCT
CTCCTCCCCCTCCCTTGCACTCTTCCTCTCTCCCCTCTCCCTCATCTTCT
TCCTTCTCTTTCCCCCTTTTCCCTTCCTCCTTCCTCTCTCCTCCTCCCCT
TTCCTCTCTCCCCCTCCTTCTCTCCCTCCCCCGTTCCTTTCTCTCTCCCC
TCTCTCTCTCCCTTCTTTTTCTTCCCTCTTCTCTCTCTCTCCCTTTCCTC
TCCCCTCTTCCCCCCTTCCCCTCTCTTTCTCTTCTCCCTTCCCCCTTCTT
CCTTCCTTCTCCTTTTCTCTTTTCTTCTTCTCCCTTCCTCTCTCATTTTC
TCCTCCTTCTCTCCCTCTCATCTACCTCCTTCTTATCTTCTCCTTCCCCT
TTCCTCCCCCCTCTTCTCTCCTCATCTTCTTATCCTACCTCTTCTCCCTA
TCTTCCTCCTACTCCCCTCCCNTCTTCCCCCCTCTCCCTTGTCCATCCTT
CTTCTTTTCCGTACTCCCTCTTCCTCCTCCCTTTCCCCCTTCACTGCTTA
CTTCCTTCCTTCCNTCTCTCTGTCTCTCTCTACATTCTATTCCGCNTTAC

GAAGTCTTNNNNGGATGACGTGTAGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGATTTACTCTGTGCCCCA
ACTTTAAATTGGATTATTTGTTTAGTTGGTATCTAGCTCCTTGAGTTCTT
TATTCATTTTAGATATTAGTCCTGGGTCAGAGATACAACCTTCTTTTACT
AAACTGAGAATAATGTTTCTGTCCCCTAGTTGTTGCGGTCCCCTCGGAAA
GGTTACACATCAAAACAACAGTTGAGCTGGGCAGTGGTGGCACATTCCTT
TAATCCCAACACTTAGGAGGCAGAGGCAGGTGTATTTCTGAATTCAAGGC
CAGTCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAA
ACCCTGTCTCTTATAACAAAAACAAAAACAACAACAACAACAAAAAAGTT
GAGATCATGTTTTTTTTTTAGCCCCAGACCAACACCAATCCACCTGTAAA
TAAAATGGGAAAGGGAGAGGGAGTTAGTTTATACAAGGCCCGCTTAGAGA
ACTAAAAAAGAAAATGCAGCAGAAACTCTTTGATACGTAATCTCAGAAGA
TAGGTTTGTGTGGCCTGAAACAGAAGCAGTCTGTTTCATTTAGAAGAGAT
GTTCCTCAGGACTAACATAAAAACCTTTATCAACCCCCTTATCCAGGAGC
TAACTGAAAGAGCCCTTGTTGAAAAGCAATGGTCTCCACCTAAGTTCAAA
GACAGCCCGAAACTCTCTTTTCCCCATGATAGGGTAAGGGTTGTTATTAA
CTTTTTCCTACTCTGCTTTTTCCTCCCCTGAAGGCTCGATTTGATAACTT
CCCCAACCTCCGGCTTCTCTATTATCCTATATATTTGGATCTCCTCCTTC
TCAATCGGGAAATTTTTTGTTTTTGAAAAATTTCATTCCACTTCTCGCTC
CCTGCTATAACTCTCTACTTGGCCTCTCCACTCCTCCCGCCTCTTTATCG
GTTGGCCAATCACATTCTGCACCCCCCCTTTTTCTCTCTTTGACTAACTT
TTATCTGTTCTCACCCTTTCTTCTCCCTCTCCTCCCCTCACTTCTCTCAC
TCTCTCTCTCCTTCCTCTTCCTTTCTCTGCTTTCTTCTTCTTCCTTTACT
CCATTCTTTACCCGTCTCACCCTTTCTCCCCTCCTCTTCTCCTTTCTACC
CCTTCATCTTATCTCTTCCTTCCACTTATGCTTTCTATCTGTTACTCTCA
TCTCCCATCTCTTCCTCCTTCTCCTACTACTCATTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_j18.b1 MSMg01no123_j18.b1 CHROMAT_FILE:
MSMg01no123_j18.b1 PHD_FILE: MSMg01no123_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:34 2005
         (269 letters)



>mm_chr3_30710095_30710762
          Length = 668

 Score =  458 bits (237), Expect = e-133
 Identities = 264/279 (94%), Gaps = 11/279 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactcagatatcttaagtgttaagcatatccctgagtactagatacttcacaggtgctat 60
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 201 cactcagatatcttaagtgttaagtgtatccctgagtactagatacttcacaggtgctat 260

                                                                       
Query: 61  aggaaaatatagtgcaattctctgcaaggaagcttttttttaaaaaaagatttattatat 120
           ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 aggaaaatacagtgcaattctctgcaaggaagcttttttt-aaaaaaagatttattatat 319

                                                                       
Query: 121 gtaagtacactgtagtctggagaccatgggcatttgacttgagccttcagaactgactgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtaagtacactgtagtctggagaccatgggcatttgacttgagccttcagaactgactgg 379

                                                                       
Query: 181 cagattgcccattataccaggaaagagagatagatctattagggaagaaagcaagctg-- 238
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 380 cagattgcccattgtaccaggaaagagagatagatctattagggaagaaagcaagctgaa 439

                                                  
Query: 239 --------ccatcttgaaaaggccaggctgtgcatgtgc 269
                   |||||||||||||||||||||||||||||||
Sbjct: 440 caagcttgccatcttgaaaaggccaggctgtgcatgtgc 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 668
Length adjustment: 9
Effective length of query: 260
Effective length of database: 659
Effective search space:   171340
Effective search space used:   171340
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)