Query= MSMg01no123_n02.b1 MSMg01no123_n02.b1 CHROMAT_FILE:
MSMg01no123_n02.b1 PHD_FILE: MSMg01no123_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:03 2005
(140 letters)
>mm_chr3_16888815_16889354
Length = 540
Score = 255 bits (132), Expect = 6e-73
Identities = 138/140 (98%)
Strand = Plus / Minus
Query: 1 tttgaatatattgagctataattgataaatttttctctgtacttttaaactaccattctc 60
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 340 tttgaatatattgagctaaaattgataaatttttctctgtacttctaaactaccattctc 281
Query: 61 ttactttcctgtggtttaagaagcctacaagaacctgtcatctaaaactgatccagtaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ttactttcctgtggtttaagaagcctacaagaacctgtcatctaaaactgatccagtaaa 221
Query: 121 ctcctccattatttgatggg 140
||||||||||||||||||||
Sbjct: 220 ctcctccattatttgatggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 140
Length of database: 540
Length adjustment: 8
Effective length of query: 132
Effective length of database: 532
Effective search space: 70224
Effective search space used: 70224
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no123_n02.g1 MSMg01no123_n02.g1 CHROMAT_FILE:
MSMg01no123_n02.g1 PHD_FILE: MSMg01no123_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:03 2005
(583 letters)
>mm_chr3_16722992_16723974
Length = 983
Score = 1091 bits (564), Expect = 0.0
Identities = 579/584 (99%), Gaps = 1/584 (0%)
Strand = Plus / Plus
Query: 1 acactttttatttattttttttgtcttgaaatt-ttttttttactagttaagtaaaaaaa 59
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 200 acactttttatttattttttttgtcttgaaattattttttttactagttaagtaaaaaaa 259
Query: 60 gggccatgataatcttctctgtatagttccaattttagtatatgtgctgccaaagcaagc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gggccatgataatcttctctgtatagttccaattttagtatatgtgctgccaaagcaagc 319
Query: 120 atgaaaatatttttcaaatattctttactttgaaattttcatgtattatattttggtcat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atgaaaatatttttcaaatattctttactttgaaattttcatgtattatattttggtcat 379
Query: 180 agtcacaccctcgcacaactccccacagatctgcctccttttcatacacacctaactttg 239
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 380 agtcacaccctcgcacaactccccacagatctccctccttttcatacacacctaactttg 439
Query: 240 tatttctagaaacattttcctatatgaagttccctcttattaaataatgttagctttttt 299
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 440 tatttctagaaacattttcctatatgaagttccctcttaagaaataatgttagctttttt 499
Query: 300 caaggtgacataaaacttcacagcataatgaacatgcacgtggaggacagaggataactt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 caaggtgacataaaacttcacagcataatgaacatgcacgtggaggacagaggataactt 559
Query: 360 tgtggtcactgtttccttcctttgaaacagggtatcttgctgatctggatctcaccaatc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgtggtcactgtttccttcctttgaaacagggtatcttgctgatctggatctcaccaatc 619
Query: 420 aaactagactggctgagcagtgagttccaggtatttacctgataggtattataatttctt 479
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 620 aaactagactggctgagcagtgagttccaggaatttacctgataggtattataatttctt 679
Query: 480 gtatatttgctcgggtttaggaaatcatattcaggtcgtcttggctggaacagaagcact 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gtatatttgctcgggtttaggaaatcatattcaggtcgtcttggctggaacagaagcact 739
Query: 540 ctattaacccatcattcccttttcccttcatatcatcatccctt 583
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ctattaacccatcattcccttttcccttcatatcatcatccctt 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
