ACTTTCCNAGATCATTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGC
GGAATTCATTTGCATGCTATGAGGAAATTTGAGGAAAGATTATTTGGCAG
TTCAAGTATGCTACAAGATCAGTTATTGCTGACTTCTTTCTTGCAGGCAC
AATATGGAACCTCAGTGCCTTCTCAGCCTAAAATGCCCCTATTTTACACT
CCGGTTGACTTAGTGGACATCAGCGTGGAAATGGCAGGGTTGAGGTTTCC
CAATCCCTTTGGCCTTGCCAGTGCGACACCAGCCACTAGCACACCAATGA
TTCGAAGGGCCTTTGAAGCTGGCTGGGGTTTTGCTCTGACCAAAACTTTC
TCTCTTGATAAGGTAAGAAAATATGTGAGAAGTTATATGCAAATATCTAG
CATGCATTTTCAATAAAAGGTGAATATAATGTGATGGAAAATTTTTAACA
TCAGGTATGCTAATTAATGAGTTGAAAACAATAAACATTACAGCTTAAAT
TTCTTTGAGCAGTATGGAATATATTCTCATTTTGTATTGTCTACGAATTG
TCAGAACTGTTTTGGCTGAGGATACATTTTGGTTGGTAAAATGTTTTCTG
CAAGGCACAAGGATCCAATTTCAATCTGCAGCACTACATAAAACATATAT
GGTGGAAGATGCTGGTAAAACTACACTAAGAAAATGGAGGCAAGATGATC
CAAAATCCAAGACCAACCTCAGCTATCAGTCTGGGCTACATGAGAGCTGT
CTCCAAAACCTATACATAAACAAATCAACAAAAACAAAACAACTCAAGCT
AGTAGAGTAATGTTTTAACCTTCCCCTCTCTCCCTCGTTTTAATTGAATT
GAACCGACCTTTGCTTTTATTTCACAAAAATGTCCTAATGAGTTTTGCCT
ATTTTCTATGTCCTCACGGTCCGGCTTTATCCCAACCATTAACCCTCTCC
GCGTCTAAAACATGCTCTTATTCCCCCCTCATAACTAAATACCCTTTCAT
AACATCCCCTTCTCACCCCCCCTCTTCTCCATACCCCCTCACTTCTCTCA
AGCGCATATCTTTACACTTTCCTCACATTCCGACCATGCTCACCCCCCTC
CTAAAATTCTCCTTCTCTCCCCTAACTTCTCTACTTCTACCTTCTACCTC
TCTTTTTTCCCTCCCATACAATTCTCCTCTCTCCCCCTTGTGTTCCCTCT
AACTTCTTAATACTCATACCTCCTTTCTTCTCCATCTCACCACTCTCCTC
ACTCTACTTTCTCTCTCCCTC

CGTTTACTANNNNAAACAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTATAGGCCCTGCCAGGTCT
GGATTATTGTGATAAAGTCCATTTAGAGGGGAACGTGGCAGAATCACTGG
GGGCGAGGGGCACAGTCATAAGAGGTGGGTAGTTGGTCAAGGGCCCTCTG
CATTGTGACCCAAGAGATGAATATGTTTCTTCTTCTGAAGAATGGAATTG
GGAGGAAATTTGCCCTTCTGGGAAGAGAAAAGTGCATGTGAGCTCTAAGA
GAGGATGAGCTTGGAATGTTCAAACGTCCAAAAGGATCCCCAAAACTTCA
AGACAGGACAAGAGTAGTATGAATAAAAATGAGGGAAACAGCCAGTAGCT
GTCACTCTAGATGTTTGACCCCTGTGGGAGTTTGCTGTCCCGTGGGAGGT
CATAAAAATATTGTCGATGCTGATAAAATGATCCAGCTTGCCTCTGTATG
AAATCTTCATAAGGAAACAAGTAAGGGCAATAGATGGCGAAAATAGGAAT
TTCATTTTGGGTAGGAACTTGTGGTAGCCACATAAATGCAGAGACATTAG
ATCCTAATTGGCTGCTGAGTATTTAGATTCAAGGAGACAAAGATGATATA
ACATTAAGTATGATTCCTAGACTACTAGCTTGAACTCTGAATTTGAGAAT
ATAAATTATATATGAACATGAAATAACGGCTACCAGGAAGATGAGTGGGA
CAACTTCAGGTTCAGTTTTAATAAGGTCCAGTGAGGTGTTTAGTAAGTAT
TTCCGTGCGGAAATCACTGATGCCTCCCTGGTGTATTTGTTGATTATTCC
CTACGGCCTTTAGCGCCCAGTTTCTACAACCTGGAAGATTGTTTTATTAT
AAAAGTCTTTATAATCCCCCTGGCAACGGTATTTGCCACTCTTACTTCTA
TTCTTCTCTCTTATTCTTTACGGCCCAAGGTCCCCTTCTTTATCTCCCTG
AAATATTTGTCTTTCTGCCTGAGAACTTTTCTCAAACTGTCCGTTCTGTT
TTTTTCCTGTTTTTCTTTTTTGTTCTCTTTTCTTTCTATTTACTCTTTCT
CCTCTCTATTTTCTCTTCTTCTCCCTCCACTCGTTCTCACTTTCTTATTC
TCCTCTTCGTTTACTTCTTTTTCCTCTTTTCCCTATCTCACCTCTATTCT
GTCCCTCCTACTCTTTCCTCTCCTTTCTCACCTCTCTCTCTCCTNACTTA
TGTTTCTATCTTTCTTT

Query= MSMg01no123_n06.b1 MSMg01no123_n06.b1 CHROMAT_FILE:
MSMg01no123_n06.b1 PHD_FILE: MSMg01no123_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:05 2005
         (531 letters)



>mm_chr3_118701867_118702797
          Length = 931

 Score =  980 bits (507), Expect = 0.0
 Identities = 525/531 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgctgacttctttcttgcaggcacaatatggaacctcagtgccttctcagcctaaaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 ttgctgacttctttcttgcaggcacaatatggaacctcagtgccttctcagcctacaatg 260

                                                                       
Query: 61  cccctattttacactccggttgacttagtggacatcagcgtggaaatggcagggttgagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccctattttacactccggttgacttagtggacatcagcgtggaaatggcagggttgagg 320

                                                                       
Query: 121 tttcccaatccctttggccttgccagtgcgacaccagccactagcacaccaatgattcga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcccaatccctttggccttgccagtgcgacaccagccactagcacaccaatgattcga 380

                                                                       
Query: 181 agggcctttgaagctggctggggttttgctctgaccaaaactttctctcttgataaggta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggcctttgaagctggctggggttttgctctgaccaaaactttctctcttgataaggta 440

                                                                       
Query: 241 agaaaatatgtgagaagttatatgcaaatatctagcatgcattttcaataaaaggtgaat 300
           |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 agaaaatatgtgtgaagttatatgcaaatatctagcatgcattgtcaataaaaggtgaat 500

                                                                       
Query: 301 ataatgtgatggaaaatttttaacatcaggtatgctaattaatgagttgaaaacaataaa 360
           |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 ataatgtgatggaaaaattttaacatcatgtatgctaattaatgagttgaaaacaataaa 560

                                                                       
Query: 361 cattacagcttaaatttctttgagcagtatggaatatattctcattttgtattgtctacg 420
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cattagagcttaaatttctttgagcagtatggaatatattctcattttgtattgtctacg 620

                                                                       
Query: 421 aattgtcagaactgttttggctgaggatacattttggttggtaaaatgttttctgcaagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aattgtcagaactgttttggctgaggatacattttggttggtaaaatgttttctgcaagg 680

                                                              
Query: 481 cacaaggatccaatttcaatctgcagcactacataaaacatatatggtgga 531
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacaaggatccaatttcaatctgcagcactacataaaacatatatggtgga 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no123_n06.g1 MSMg01no123_n06.g1 CHROMAT_FILE:
MSMg01no123_n06.g1 PHD_FILE: MSMg01no123_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:05 2005
         (594 letters)



>mm_chr3_118828115_118829108
          Length = 994

 Score = 1102 bits (570), Expect = 0.0
 Identities = 585/590 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gtggcagaatcactgggggcgaggggcacagtcataagaggtgggtagttggtcaagggc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 gtggcagaatcactgggggcgaggggcacagtcataagaggtgggtagttggtcaagggc 735

                                                                       
Query: 65  cctctgcattgtgacccaagagatgaatatgtttcttcttctgaagaatggaattgggag 124
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 734 cctctgcattgtgacccaagagatgaacatgtttcttcttctgaagaatggaattgggag 675

                                                                       
Query: 125 gaaatttgcccttctgggaagagaaaagtgcatgtgagctctaagagaggatgagcttgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gaaatttgcccttctgggaagagaaaagtgcatgtgagctctaagagaggatgagcttgg 615

                                                                       
Query: 185 aatgttcaaacgtccaaaaggatccccaaaacttcaagacaggacaagagtagtatgaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 aatgttcaaacgtccaaaaggatccccaaaacttcaagacaggacaagagtagtatgaat 555

                                                                       
Query: 245 aaaaatgagggaaacagccagtagctgtcactctagatgtttgacccctgtgggagtttg 304
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 554 aaaaatgagggaaacagccagtagctgtcactctagatgtttgacccccgtgggagtttg 495

                                                                       
Query: 305 ctgtcccgtgggaggtcataaaaatattgtcgatgctgataaaatgatccagcttgcctc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ctgtcccgtgggaggtcataaaaatattgtcgatgctgataaaatgatccagcttgcctc 435

                                                                       
Query: 365 tgtatgaaatcttcataaggaaacaagtaagggcaatagatggcgaaaataggaatttca 424
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 434 tgtatgaaatcttcataaggaaacaagtaagggcaatagatggtgaaaataggaatttca 375

                                                                       
Query: 425 ttttgggtaggaacttgtggtagccacataaatgcagagacattagatcctaattggctg 484
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ttttgggtaggaacttgtgatagccacataaatgcagagacattagatcctaattggctg 315

                                                                       
Query: 485 ctgagtatttagattcaaggagacaaagatgatataacattaagtatgattcctagacta 544
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 314 ctgagtatttagattcaaggagacaaagataatataacattaagtatgattcctagacta 255

                                                             
Query: 545 ctagcttgaactctgaatttgagaatataaattatatatgaacatgaaat 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ctagcttgaactctgaatttgagaatataaattatatatgaacatgaaat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)