BAC Information

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BAC

Clone NameMSMg01-124F10
Chromosome3 (Build37)
Map Location 62,531,134 - 62,531,504
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC669910, LOC676965, 4631416L12Rik, Dhx36, Gpr149
Downstream geneLOC676984, LOC666967, Mme, Plch1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124F10.T7 (MSMg01no124_f10.b1)MSMg01-124F10.TJ (MSMg01no124_f10.g1)
ACCAG333717AG333718
length1,2431,252
length of high quality
(start - end)
371 (478 - 848)379 (92 - 470)
definitionCHROMAT_FILE: MSMg01no124_f10.b1 PHD_FILE: MSMg01no124_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:18 2005CHROMAT_FILE: MSMg01no124_f10.g1 PHD_FILE: MSMg01no124_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAATTTTTNNNNAATCATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATGAAAGTAAGAATATCACATACTCAAAATTATCAGACA
CAATGAAAGCAGTGCTACGAGGAAATACTATGTGCCTACATTAGAAGTTG
GAGAGATCTCATACTAGCAATTGAACAGCATACCTGAAACTCTAGAAGAA
CAACAACAGCAACAACAAAAGTAAGCACACCCAAGAGGAGTAGGTTACAA
TAAATTGAAGGCTGAAATTGATAAAGTGGAAACAAACAAACAAACAAACA
AACAAACAAAAAACAGTAAAAAGAAGCAAAGAAAAGACTTGGTTCTTTGA
GAAAATCAAAATGACAGAAAAGCCCCTACCCAAACTAAATAAAAGACAGA
GAGATAATTTCAAATTAAGAATTTTTTTTAAAAAGGGGGGATGGGGCAAC
AGAAAATAAGACTATGGGGACCCCCAGAGTTATAAAAACATATTTTTAAA
ACCTATACTCCATTAAATTGAAAAAAAAACTGAAAGAAATGGATAATTTT
TTCATAGTTAAATCAAGATCAGATGAACAGATCTTGGTTCTGGGACTCTA
CCAAGACTAGTCTGCACAGGTGAGAGTGTGGACTACAGAAGCTAACAGCT
TATGGGACAGGCGGGAGCCACAGAGCTTCTGAAGCAGCCCCCTTTTCAGG
CTCCAGACATCCGGGCACCTTCCCTGCCAGAGGAGAGGTGTCCGCCTGGC
CCGGGAGGGCTGGCAGGAACACCTGAGGGAGCCATCTTGGTTCCCAGATC
CCTCGGAGACTAGTCTGTGCAGGTAGGAGTGTGGACTACAGAAGCTAACA
GCTTCTGGGACAGGTCCTGTTTTGGTCCTTCATCTTCGGCCAGGAGGGAT
GTTCGAATGCCCGATATCTGGTGCACCTTCCCTGTAAGAGGAAAACTTAC
CTGCCGAGAGTTCTCTGACCACTGAAACCTTATAGGAGAGAGTTAGCCTC
CCCAGTCTGCTGATAGAGGATTACAGAATTCCCAGAGGGACCATTTCTAA
CCCGAAACCCTTATAATAACTAACTCCCGAGATTTACCGATGGGAAAAAT
TCGAAAGACTCTTTTCTAACGAAAACCAAGACCCCTTCCCCCCTTCTGAA
CCCCGGAACCCCCCCCTTGCCCATTCTAGGGTAACCCCAAATTTCCCAAA
AAGTTAAACCCGCGATTTTAAAGCCTATTCCCTGGGGAGGGGC
NNCCAAGAAATAANNNNAAAGCATGTGAGGCTGGXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAATAAGCAGATGAA
ACTAAAACAAAGAGAGAAATACCCTTTTTTTGGCCACCATAGCTATATGT
AGGATGTACATTTGGCAACTGCAGCCATCTTCAAAAATGTTGGAGGAAAA
ACCTCCTAAAGAGCCAAAGTAGAAATGGGAGTCAGTGACTTGAAGCTCTC
ATATTGGTGCTAGTACCACTCTACTCATCCATGATCATGTATGTTTACCC
CACCCAACAGAAAATCAGTAGCAAACATGAAGTTAAAATATACTTTGATG
AAACATAGACTTCAGTACAAAATAGAATCAAGGTGTGAGTAGACAATGAG
TATTTTGCACAATCCTACTCAATAAATTTTCTGAAGATTTAAAATAGAAT
CAAAACCCAAATGAATCTACCACATGTACGATCTACAAGAGGATTTTGTG
AAACCTGGATTTGATCCATGGCTTGATCACTTACTGACAATTTAATTTCA
TGATTACTAGGATATTTATGTACCCAGATTTACTGTTTGCAGAAAGGTAA
TTCTACTGTTGCATTTTCTAGATTCCAAGGAGAATGTTCCATTTGTGATT
GTTGTTTACCAGAAGCCTGTCTTGCACTTTCACACATTATGTCAACTTAG
TGTCAGCATTTAATAGTGATATGTCTTACAGGCGCTGATGTTTTACCTAT
TACAATAAGCCCAATAGTCATCTTTTATGACTTTACTTTATTCCATGCCT
GGGTATGAATACCATTCTTTCTGTAAGCCTGAAAAAATAAAGCCCACCAT
GATTAATTCCACCAATTGTTTATGCACCACCTAAGGTGTAAAAATTTTTC
ATCTATCGTTGTTTGTCATAATGCCTTTCCTTCTCTGTCTTTCTGGATAA
ACAAACAGCCCTCTCATTGTAACTTTGTCAAAATCCGTGTCTTCAAAACT
ACTCTTTATCTACCCCTCCTAATATAACCTTCGCAAATATTGGTATTAAT
ATCCTCTCTGTAAATTTACTGACCCACCCCCGTGTCTCTTAAGTCCAAAG
CTATCCATTAACGTATAATTTGAAACTTTCCTACAATTCTCTACAATCTA
TACCCTATAATCTCTGTGCACTTGCTTTAATTTTTATCATTTTTTTTCTT
TTATTTCTCTGTTCTACTTTGTTCATATTATTTCATTTCTCTTATTATAT
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_f10.g1 MSMg01no124_f10.g1 CHROMAT_FILE:
MSMg01no124_f10.g1 PHD_FILE: MSMg01no124_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:18 2005
         (379 letters)



>mm_chr3_62530934_62531709
          Length = 776

 Score =  661 bits (342), Expect = 0.0
 Identities = 365/374 (97%), Gaps = 3/374 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcagatgaaactaaaacaaagagagaaataccctttttttggccaccatagctatatgta 60
           |||||||||||||||||||||||||||||||  ||||   ||||||||||||||||||||
Sbjct: 201 gcagatgaaactaaaacaaagagagaaatacagtttt---ggccaccatagctatatgta 257

                                                                       
Query: 61  ggatgtacatttggcaactgcagccatcttcaaaaatgttggaggaaaaacctcctaaag 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 258 ggatgtacatttggcaactgcagccatcttcaaaaatgttggaggaaaaacctcctgaag 317

                                                                       
Query: 121 agccaaagtagaaatgggagtcagtgacttgaagctctcatattggtgctagtaccactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 agccaaagtagaaatgggagtcagtgacttgaagctctcatattggtgctagtaccactc 377

                                                                       
Query: 181 tactcatccatgatcatgtatgtttaccccacccaacagaaaatcagtagcaaacatgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tactcatccatgatcatgtatgtttaccccacccaacagaaaatcagtagcaaacatgaa 437

                                                                       
Query: 241 gttaaaatatactttgatgaaacatagacttcagtacaaaatagaatcaaggtgtgagta 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 438 gttaaaatatactttgatgaaacatagacttcagtagaaaatagaatcaaggtgtgagta 497

                                                                       
Query: 301 gacaatgagtattttgcacaatcctactcaataaattttctgaagatttaaaatagaatc 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gacaatgagtattttgcacaaacctactcaataaattttctgaagatttaaaatagaatc 557

                         
Query: 361 aaaacccaaatgaa 374
           |||||| |||||||
Sbjct: 558 aaaaccaaaatgaa 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 776
Length adjustment: 9
Effective length of query: 370
Effective length of database: 767
Effective search space:   283790
Effective search space used:   283790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)