BAC Information

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BAC

Clone NameMSMg01-124H05
Chromosome3 (Build37)
Map Location 77,942,982 - 77,943,588
singlet/doubletsinglet
Overlap genenone
Upstream geneDnmt3a-ps1, EG626461, LOC667526, LOC626479
Downstream geneLOC100041691, LOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124H05.T7 (MSMg01no124_h05.b1)MSMg01-124H05.TJ (MSMg01no124_h05.g1)
ACCAG333802AG333803
length1,2591,294
length of high quality
(start - end)
608 (112 - 719)325 (124 - 448)
definitionCHROMAT_FILE: MSMg01no124_h05.b1 PHD_FILE: MSMg01no124_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:34 2005CHROMAT_FILE: MSMg01no124_h05.g1 PHD_FILE: MSMg01no124_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATGCGCGCTATXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTACAAAG
GGTAAGCTCCCCTTACATGAAAAAGTGTAGTAGGCTAGGATATTTAAATC
CTTTAAAGACATTGGGTTTATGGAGATTATCGAGTGGAGATGAAGATGCC
GAACAGCCACATTGTAGTAAGCTGTGCAGTCTCTGGTTTAAAGAGAACTG
CCTCATCACCACTGTTTTCCTGTGAGACAAGGGAGAGGGGTAGAAAATAA
TTGCTTAATTATTTAAAGACATATACATATGCTTTCGAGCTTTATTTTTA
ACAAATTTCATCATTCAGTTCTCACATTTGGCACAAAATATTACTTATGC
GTTATTAGCAATTTGACACTAGATAATATTTACCAAAAAAGGTTATTATA
GTAACTGAACATGATGACAAAATCAGGTGTGGTCTCATCCCAATGTAAGA
TGAGGCACTTACTGCTCAGCTTAAGTGAGCTCTTTGCACAATGTGACTGT
GTCACATATCACACTTGAGCAAAATAAATCCATAATAGTTTTGAATTTCA
AAATGAAATACTAAAATTGAATGACTATACTACAAGTGCATAAATCTCTA
ACAATATAAGAAACAATAACTAGCTTTGTAAAAGAAACTTGCTTTATATA
TTAATAATTTCCTAAATAGAACTATAAATATGAAGGATTTCAATAGATTC
TATTATGAAATATCTAGGAATGAACCAAACAGAAAAAAATGAGTGATGTA
AAGCATCCAACTCTAACTAAAAATTCACATGGATTACATACTATCCGTGA
TATACAGAAGCAAAGGCTGTATGATCTTATTCATCAATATAGAAAAATAC
CTTTTATAACATTGAAAAACCATTTCAGGTTATAAAGAATATTTCTAAAC
TGTTAATAGGCAAAACCAATTCCTAACTTTACTCTTAGGGATTTACTAGA
GTAACTCTGTTCCTGTGAAACTGAGGGAAAGTTTCTAACTCTCCTGAAGC
TTAACTAGTTATAGGGATGCATGGCTGTAGGTAGGCTGTCAAAAAAACAA
AATGAAAGCCCCTTCAGCTTAAACTTATTAGAAAATATTCTGCCACCCCT
TTTGTGTGAAGAATCCCCTTGGTCTATATCCTAAAAGGGTCGTTCCCCTT
AAAGAGGTGTGGCACCCCTTTTGAACTTTTAAAAAAAGTTCCCCTGTGCT
CTGTGTACAACAAAAACAATTGGGCCTTCTTCTCTTTCTCACAACTTGAC
ATAAATATA
NTTTCACCAATGGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCTTTTAACTGAGGAATACCGAATGGCAGAGAA
GCACCAGACCCTTTAGATACCCATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCCCAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCA
GTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGC
AATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGG
ATTTTTGATCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGC
TGTTTTTATCCTACCCGCCCCTCAACAGACGAATGGATACAAAAAATGTG
GTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA
TGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAG
GTAACACATTCACAAAGAAACTCACACAATATGTACTCATTGATAAGTGG
ATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTAA
ACACATGAAACTCACGATAAATGAAGACTGAAGTGTGGACACTATGCCCC
TCCTTAAATTTGGGAACCAAACACCCCTGTAACGAGTTACTGAGACAAAG
TTTGGAGCTGACATGAAAGGAAGGACCATGTTTAAGACTGCCCTATCCCG
GGTATCCCCCCCTTATTCCCCATCCCAAACGCTGGACCCATTTGCTAACT
CTTACCAGGATTTTATTTGAAGGGACCCCCAATGGTACCCTGTCTCCTTG
GTGAAACTATGCCCGGGCTCCATTCATAATTCTGATATTGGTATTCTTTC
TGCTTCGCTTTATGGCAATGAATCCTATGCCCTCCCCAAAGTTTGCACTT
TAAATAAATTACCCCAATGTATTCAAGTGGTTCCTGCCAACCTTTATGGC
TGGTACAATCATTTTGATAACTACCCCGAACCCCCTGAAACTCTTTTAAT
TTTTATTTCCTATTATTTCAACAAGAAGGTCCAAATCTCGCCCTTTCTCT
GTAAATAAAATGGCCCCTTTGTGATCTAGTAAAATCTTAATTGGTCCCAC
TTCCACAAGAATACACATCTTCTCCTCATAAACGGCGTGTATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_h05.b1 MSMg01no124_h05.b1 CHROMAT_FILE:
MSMg01no124_h05.b1 PHD_FILE: MSMg01no124_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:34 2005
         (608 letters)



>mm_chr3_77942782_77943788
          Length = 1007

 Score = 1042 bits (539), Expect = 0.0
 Identities = 591/609 (97%), Gaps = 3/609 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgggtttatggagattatcgagtggagatgaagatgccgaacagccacattgtagtaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgggtttatggagattatcgagtggagatgaagatgccgaacagccacattgtagtaag 260

                                                                       
Query: 61  ctgtgcagtctctggtttaaagagaactgcctcatcaccactgttttcctgtgagacaag 120
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 ctgtgcagtctccggtttaaagagaactgcctcatcaccactgttttcctgtgagacatg 320

                                                                       
Query: 121 ggagaggggtagaaaataattgcttaattatttaaagacatatacatatgctttcgagct 180
           ||| ||||| ||||||||||||||||||||||||||||||||  ||||||||||| ||||
Sbjct: 321 ggaaagggggagaaaataattgcttaattatttaaagacata--catatgctttcaagct 378

                                                                       
Query: 181 ttatttttaacaaatttcatcattcagttctcacatttggcacaaaatattacttatgcg 240
           |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| 
Sbjct: 379 ttatttttaacaaatttcatcattcagttctcacatttggcacacaatgttacttatgct 438

                                                                       
Query: 241 ttattagcaatttgacactagataatatttaccaaaaaaggttattatagtaactgaaca 300
           ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 439 ttattagcaatttgacactagataacatttaccaaaaaaggttattatagcaactgaaca 498

                                                                       
Query: 301 tgatgacaaaatcaggtgtggtctcatcccaatgtaagatgaggcactta-ctgctcagc 359
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 499 tgatgacaaaatcaggtgtggtctcatcccaatgtaagatgaggcacttaactgctcagc 558

                                                                       
Query: 360 ttaagtgagctctttgcacaatgtgactgtgtcacatatcacacttgagcaaaataaatc 419
           ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 559 ttaagtgagctctttgcacaatgtgactgcgtcacatatcacatttgagcaaaataaatc 618

                                                                       
Query: 420 cataatagttttgaatttcaaaatgaaatactaaaattgaatgactatactacaagtgca 479
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 619 cataatagttttgaatttcaaaatgaaatactaaagttgaatgactatactacaagtgca 678

                                                                       
Query: 480 taaatctctaacaatataagaaacaataactagctttgtaaaagaaacttgctttatata 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 679 taaatctctaacaatataagaaacaataactagctttgtaaaagaaacttgctttataca 738

                                                                       
Query: 540 ttaataatttcctaaatagaactataaatatgaaggatttcaatagattctattatgaaa 599
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 739 ttaataatttcctaaatagaactataaatatgaaggatttcaatagattttattatgaaa 798

                    
Query: 600 tatctagga 608
           |||||||||
Sbjct: 799 tatctagga 807


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1007
Length adjustment: 10
Effective length of query: 598
Effective length of database: 997
Effective search space:   596206
Effective search space used:   596206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)