BAC Information

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BAC

Clone NameMSMg01-125E14
Chromosome3 (Build37)
Map Location 46,574,419 - 46,574,983
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC671801, EG241989
Downstream geneLOC545517, LOC383849, LOC383850, LOC100039426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125E14.T7 (MSMg01no125_e14.b1)MSMg01-125E14.TJ (MSMg01no125_e14.g1)
ACCAG334417AG334418
length718729
length of high quality
(start - end)
468 (69 - 536)564 (72 - 635)
definitionCHROMAT_FILE: MSMg01no125_e14.b1 PHD_FILE: MSMg01no125_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:17 2005CHROMAT_FILE: MSMg01no125_e14.g1 PHD_FILE: MSMg01no125_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGCCATCCGCGGAATTCTCAC
CTGATTCCTACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCC
TTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCAC
ACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGC
GTGGATGTGGAGAAAGAGGAACACTCCTCCATTGGTAGTGGGATTGCAGG
CTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGA
CATAGTACTACAGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAG
AAGTTGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCA
GCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAAC
AGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACT
CAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGAC
CTGGAGGGCATCCTCCTGAGTGAGGTAACACATTCCCAAAGGAACTCACA
CAATATGTACTCACTGATAAGTGGATATTAGCCCCAAACCTACGATACCC
ATGATCATAGATACAATTTTCTAAACCCCTGAAACTCAAGACAAATGACC
ACTGAAGTGTGCACCCTG
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGGTTCCTAAAGAAAAATCCAATTGCC
ATCCTTTAATATTACACCTCACCCTTGGAGTTTGAGTCAGATGTTATCTG
ATGGCTTATTTGAATATTGTATTTTCCCTGAAACAGTTTCATCGACCATA
ACTCCTCTAATTATTTTGACAGTGGAAAATATTAAATTGACATTAAACTA
TTTTGAAAACTGAACACAATAGTAAACAAAGAGTAATACATAAAGGAAGT
ATTACTTCTTAAACAGTAATGTTGTCTTTGGGTAATAAGGGCATCCACTA
TCTCCACATACATAGCCAAATAGAGCCGAAAGAGCAAAAGTGAAATTATG
AAAAAGAATAGCATCTGTATTTTCTAAATTATACATGGTAGAAATTTTGA
GAGATTCACATCTGTTCTTGGGATTTAATATTCCCTAATCATGCACAAGA
AACTTCCCTAAGCTATCTGTTATAGTTGCCATAAAATAAAATATCAAAGA
AAGCTAGAAACCTAATGTTATATTTTGAAGCCTTTGAGAATAAACACCAA
GTGGCTATAGGTCTCAAAACACTAAAGAATATATTCACTTTAATGGATAA
AAAATGAGGACAGACAGTTTATCTAAAGGAAAATACATCAATTTTGTCAG
GCTTTGGCCCAAAATTTAATTTTATAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_e14.g1 MSMg01no125_e14.g1 CHROMAT_FILE:
MSMg01no125_e14.g1 PHD_FILE: MSMg01no125_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:17 2005
         (564 letters)



>mm_chr3_46574219_46575183
          Length = 965

 Score = 1062 bits (549), Expect = 0.0
 Identities = 561/565 (99%), Gaps = 1/565 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttggttcctaaagaaaaatccaattgccatccttt-aatattacacctcacccttggag 59
           |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 201 tttggttcctaaagaaaaatccaatttccatcctttaaatattacacctcacccttggag 260

                                                                       
Query: 60  tttgagtcagatgttatctgatggcttatttgaatattgtattttccctgaaacagtttc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgagtcagatgttatctgatggcttatttgaatattgtattttccctgaaacagtttc 320

                                                                       
Query: 120 atcgaccataactcctctaattattttgacagtggaaaatattaaattgacattaaacta 179
           |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 321 atcgaccataactcctctaattattttggcagtggaaaatattagattgacattaaacta 380

                                                                       
Query: 180 ttttgaaaactgaacacaatagtaaacaaagagtaatacataaaggaagtattacttctt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttgaaaactgaacacaatagtaaacaaagagtaatacataaaggaagtattacttctt 440

                                                                       
Query: 240 aaacagtaatgttgtctttgggtaataagggcatccactatctccacatacatagccaaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacagtaatgttgtctttgggtaataagggcatccactatctccacatacatagccaaa 500

                                                                       
Query: 300 tagagccgaaagagcaaaagtgaaattatgaaaaagaatagcatctgtattttctaaatt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagagccgaaagagcaaaagtgaaattatgaaaaagaatagcatctgtattttctaaatt 560

                                                                       
Query: 360 atacatggtagaaattttgagagattcacatctgttcttgggatttaatattccctaatc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atacatggtagaaattttgagagattcacatctgttcttgggatttaatattccctaatc 620

                                                                       
Query: 420 atgcacaagaaacttccctaagctatctgttatagttgccataaaataaaatatcaaaga 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgcacaagaaacttccctaagctatctgttatagttgccataaaataaaatatcaaaga 680

                                                                       
Query: 480 aagctagaaacctaatgttatattttgaagcctttgagaataaacaccaagtggctatag 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagctagaaacctaatgttatattttgaagcctttgagaataaacaccaagtggctatag 740

                                    
Query: 540 gtctcaaaacactaaagaatatatt 564
           |||||||||||||||||||||||||
Sbjct: 741 gtctcaaaacactaaagaatatatt 765


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 965
Length adjustment: 10
Effective length of query: 554
Effective length of database: 955
Effective search space:   529070
Effective search space used:   529070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)