BAC Information

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BAC

Clone NameMSMg01-125F16
Chromosome3 (Build37)
Map Location 28,080,131 - 28,080,515
singlet/doubletsinglet
Overlap genenone
Upstream geneAadacl1, LOC100040527, Tnfsf10, Ghsr, Fndc3b, E030011K20Rik, Pld1
Downstream geneTnik, Slc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527, 6130401L20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125F16.T7 (MSMg01no125_f16.b1)MSMg01-125F16.TJ (MSMg01no125_f16.g1)
ACCAG334466AG334467
length736708
length of high quality
(start - end)
648 (40 - 687)608 (69 - 676)
definitionCHROMAT_FILE: MSMg01no125_f16.b1 PHD_FILE: MSMg01no125_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:22 2005CHROMAT_FILE: MSMg01no125_f16.g1 PHD_FILE: MSMg01no125_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TCACTCCACTCTACTAAAAAGCAGTTTTGAGAAGACTGTTGTCCCAGCCT
CTTAATATGGGTGGATGGTTTGGTCATTTTATGAGTTATAGATATGTTAT
CATTTTAGGAGATAATTATGGATAATGATTTTCTTGGACAGGGAGGAAAT
GAAGTAAAAAGCTTATACTTAGGGATTTCTAACTTTCTTCTTTTCTATTC
TTTCTTTCTTTCTTAGATAAAGAGTAGGGGTTAAAAAGAAGAACAGGAAT
ATTATAGGACATTTGAAAAATAAATAGGTGTAGATTATAGAATCTTCTCT
TAAAAAAAATTACAACCATAATCTTACATTGGTCAAGATCCTTATATTTT
GATGTAGAATTGAGGTTATATTTTCTTACATTCATAGGAAATTTTGTAAA
TTGATACAGGTTTAACATGTTCATTGGTATAAATCTTGATATATAGATAC
GAAATTTAAGATTAATTTTGTTACAACACAATAGAGGTATGTTTCAACAC
TTGTATAGGTATTATGCCTATGCAAGTCATTTAATAACATGAGGTTTAGT
CCCAGTCCTTTCAGTAGCTACTATTACAAACTGGTTTAAAATAATTAAGT
AATACAAGTTAATAGTCATATAGTCAAACTCATGGTCATATTAGATACTA
CTCTAGTTAATTACAATAAAATGTTTTCAAGGTTAT
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTTGCCTTCATCCAAGACCTACAGTCCTGGCT
TTGAGTGATGCCCAAGTTGGGTAGGCATACTCTTGCAGCCGTCTCACCGG
CCTTCCTGTATTAGTTTCGTTTCTGTTGCTGTGATAAAATACTATGGGGG
CGGGGGGGGCAGAGAACTACTTAAAAAAATAAATAAATAAAAGAAAGTTC
TGTTTAAAGCATTTCATCTGCACTGGGAAGCAGCTGAGTGCCCTGGAAGT
AGAACCAGGCTATAAATCCTCAAAGCCCACTCTCTGATGTCTTTCCTCCA
TCAAGGCCCTGCCTTCTAAGCTGAGGTACAGCTGGTTGAGGAGCCTATGG
GGACACTCATTTCATAGCCCAGCACTTCCTTTCCTCTTCTCCCTCTGCCC
CCTCCCTCCTGCTTCCCCTCCCTGCCTTCATCTCTGATTTCCTTAGTTCC
TACCCATCTGAAGCTCTCGGAAATGTGCTGTAACGCTAAGACAACAAGAG
AGCCCAAGCGACAGCACTGAGGGACAGTTACTAGAGCTAGAAGAAGATAT
CTAGCTAATATCTCCAGCCCAAAAGGAAGGAGGAATGGGTATATCATTCC
TAGAACCCCCAGAACAATTATAGTTTAGAAAGAGGGGTCACCTGGCAACA
TCTGTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_f16.g1 MSMg01no125_f16.g1 CHROMAT_FILE:
MSMg01no125_f16.g1 PHD_FILE: MSMg01no125_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:22 2005
         (608 letters)



>mm_chr3_28079514_28080515
          Length = 1002

 Score =  683 bits (353), Expect = 0.0
 Identities = 379/391 (96%), Gaps = 6/391 (1%)
 Strand = Plus / Minus

                                                                        
Query: 218  gagtgccctggaagtagaaccaggctataaatcctcaaagcccactctctgatgtctttc 277
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1002 gagtgccctggaagtagaaccaggctataaatcctcaaagcccactctctgatgtcttcc 943

                                                                        
Query: 278  ctccatcaaggccctgccttctaagctgaggtacagctggttgaggagcctatggggaca 337
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 942  ctccatcaaggccctgccttctgagctgaggtacagctggttgaggagcctatggggaca 883

                                                                        
Query: 338  ctcatttcatagcccagcacttcctttcctcttctccctctgccccctccctcctgcttc 397
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882  ctcatttcatagcccagcacttcctttcctcttctccctctgccccctccctcctgcttc 823

                                                                        
Query: 398  ccctccctgccttcatctctgatttccttagttcctacccatctgaagctctcggaaatg 457
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 822  ccctccctgccttcatctctgatttccttagttcctacccatctgaaactctcggaaatg 763

                                                                        
Query: 458  tgctgtaacgctaagacaacaagagagcccaagcgacagcactgagggacagttactaga 517
            ||||||||||||||||||||||||||||||||||||||||||||||||      ||||||
Sbjct: 762  tgctgtaacgctaagacaacaagagagcccaagcgacagcactgaggg------actaga 709

                                                                        
Query: 518  gctagaagaagatatctagctaatatctccagcccaaaaggaaggaggaatgggtatatc 577
            ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 708  gctagaagaagatatctagttaatatctccagccccaaaggaaggaggaatgggtatatc 649

                                           
Query: 578  attcctagaacccccagaacaattatagttt 608
            |||||||||||||||||||||||| ||||||
Sbjct: 648  attcctagaacccccagaacaattgtagttt 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1002
Length adjustment: 10
Effective length of query: 598
Effective length of database: 992
Effective search space:   593216
Effective search space used:   593216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)