BAC Information

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BAC

Clone NameMSMg01-125N06
Chromosome3 (Build37)
Map Location 19,118,697 - 19,118,881
singlet/doubletsinglet
Overlap geneMtfr1
Upstream geneCyp7b1, LOC622921, LOC100040153, Armc1
Downstream genePde7a, Dnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg, Cpa3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125N06.T7 (MSMg01no125_n06.b1)MSMg01-125N06.TJ (MSMg01no125_n06.g1)
ACCAG334813AG334814
length706810
length of high quality
(start - end)
185 (284 - 468)---
definitionCHROMAT_FILE: MSMg01no125_n06.b1 PHD_FILE: MSMg01no125_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:59 2005CHROMAT_FILE: MSMg01no125_n06.g1 PHD_FILE: MSMg01no125_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCTATAATTGCGGCGCTAAACGACTCCTATATCGAGAGGACCGCGGAA
TTCATTGTCCTTTCTGAGCCGGGAAATTTTCAATTAAAGCCTTCATTTTC
CCTGTAGACTTCGATATATGTGGGCCAAACTGGAAAAGAAAAAAAAAAAT
CCAAAGCATGGAGTAAGTCAGCAAGTATCTTCATGCAAACGACAGGCAGG
AAGGAGTTCGTATTCGTGTGGTCTACTCAGTCTCTGTGTGATGCAACATA
TACCTCACAAGCCTATGTCAGATCTCACTGGTAAAACTCACCAAGCACCC
CTAGGAGAAAATGATCCTGTCTAATTTTGAGTAAATCTTTTAAAATCTGA
ATACAAACACTATACTATATCATAATAAAAAATATTATTAGATTGAATTT
CACTTCATTATACCTAAAGACAAAAATAAAACCCTGCAGGGAAAATTTAA
CATTGGAAAGTGAAACCCAGGGTTAAACTCTGCTTTTTTTCACTTAGGTT
TCTCTGTAAGTTTTGGATTTCCAAACAAATTAAGTTTTACAGTGAGAAAA
GTAGAAATACAAACAAACATGTCATCCTTGCTGGTCACCATGGCACAACT
ACTTATAATCCCCGCCTCACAGGTAGAGGTAGCAAGATCAGGATTTAAGC
CAACCCTGTTACACCCCTAGTTTAAGTCCAGGCTGGATTTCCTAAATCCC
AGTTTG
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCCAGAAATTCTCCCTCAATCCAAAACACAACACA
TGAATTGGATGTCAAATTTTATATGATGTTTGCCATAACTAGTTTCCCAC
AACTTTACTCTCTTGCTAGTTCTCCTTTTTTCCCCTATAAACTCACTCTT
TCTTGCTGACACGGTTTAATTTTCCTGCTTCGAAACACGGCACTTCTCAC
CTCTTTAGAACCATAATAGTAGTCCTATCAGGCCTTAGAGGACAGCATTA
TCGAGTCTTTGAGAGCCAAGTAGAGGCCCTTGCTTCTAGGGATGCCTTAT
ATTGTAATTTCGAACAAGGTAACTCAGGACTGCACCACGATGGCACACGA
ACTCTCACCACTCATCCATTATAGGATATGACGATATAGTTCCTATAGGG
CACCTCGTAAGCTCACATACTATTATGGTCAAGCTTCCTTCTGATCTTCA
CAGCGGACGTACGCATAAAAGGTTTGAGCTTTTAAAGAGTGCTCCATGAG
CAACTACTGGGTTCGAATAAAAGAGATACTCGCGCATTTCCACCATTTTC
CCTTGACCTAACCGTTTCGCAATTCCCAATAAACCACAGTGCCATAGTTT
TCTTAGTACAATATCATCGACCTGTAAACACACAATCTCTCCTAACCGAT
TGTTAATCTTTCCTTTGATCCTTCCCACCGCCCATAATTTCTACAAGATA
TTCCTCTAGCTTACTCCTCACTAAATCCCTCTTCATGAGGTCCCCTCCTT
AATTTATNTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_n06.b1 MSMg01no125_n06.b1 CHROMAT_FILE:
MSMg01no125_n06.b1 PHD_FILE: MSMg01no125_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:59 2005
         (185 letters)



>mm_chr3_19118497_19119081
          Length = 585

 Score =  319 bits (165), Expect = 6e-92
 Identities = 180/185 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaactcaccaagcacccctaggagaaaatgatcctgtctaattttgagtaaatcttttaa 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaactcaccaggcacccctaggagaaaatgatcctgtctaattttgagtaaatcttttaa 326

                                                                       
Query: 61  aatctgaatacaaacactatactatatcataataaaaaatattattagattgaatttcac 120
           ||||||||||||||||||||||| ||||||||| |||| |||||||||||||| ||||||
Sbjct: 325 aatctgaatacaaacactatactttatcataatgaaaattattattagattgagtttcac 266

                                                                       
Query: 121 ttcattatacctaaagacaaaaataaaaccctgcagggaaaatttaacattggaaagtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcattatacctaaagacaaaaataaaaccctgcagggaaaatttaacattggaaagtga 206

                
Query: 181 aaccc 185
           |||||
Sbjct: 205 aaccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 585
Length adjustment: 8
Effective length of query: 177
Effective length of database: 577
Effective search space:   102129
Effective search space used:   102129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)