BAC Information

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BAC

Clone NameMSMg01-126A13
Chromosome3 (Build37)
Map Location 28,110,727 - 28,111,068
singlet/doubletsinglet
Overlap genenone
Upstream geneAadacl1, LOC100040527, Tnfsf10, Ghsr, Fndc3b, E030011K20Rik, Pld1
Downstream geneTnik, Slc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527, 6130401L20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126A13.T7 (MSMg01no126_a13.b1)MSMg01-126A13.TJ (MSMg01no126_a13.g1)
ACCAG334961AG334962
length991707
length of high quality
(start - end)
---342 (70 - 411)
definitionCHROMAT_FILE: MSMg01no126_a13.b1 PHD_FILE: MSMg01no126_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:16 2005CHROMAT_FILE: MSMg01no126_a13.g1 PHD_FILE: MSMg01no126_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTTTTTTTGCGGGCGCCCGNTACNATCTGCCTTCTCCCAAAGAGGGGG
NCGGGGGNNNCNCNGTNNGCCGTCCCCCCAAAGAGAGTTGTTGGCCTTGG
TTTGTCTTGCGGGGTCGCGGTGCCGTGCGGTGTGTGGTCGCTCGCGCTCG
CCTCCTCCTCGCCGTCTTGTCTTTTATTGTTTTTGTTCGCCGTGGTGCCT
TGCGTGAGCTCCGTTGTCTGCTGATTTCGTCCTTTTTTTTGTTTTCTGTA
TCTGCTCTTGCGCCTATGCACCGCGGGCCGCCTTGCTCTTGCGCCCCTTA
CATTTTCCCCATATACCCCGTTATCGCGCGCCCTCCGCGCTCGGCGCGGT
TTGCCGTGTGACGAGCGTCCTGGCCGTTCGTACGTTTTGTATTGACGTCG
CCTGGTCGTAAACGTCTCTGCTTCTGCTGTGTTCTCCGGCGGATATTGCC
TGCGTTCCTACTTTCCCCTCTATATCCCCTTCTTTATCCCCTATACTCCT
AATATCATTCATTCGCTTTGGGGTGGGTGTGGTGTGCCGGTCCTTTTTAT
GCCTCCCCACTCGCTTTTTGATTCGCTTTCCTGTCGTACAGCGCCACGTT
ATTTTCTGCTGTAGCCTGTGACTTGCCCCTATTTTATGAGCTTGTTGCTT
GCATTTATTTCTGCTTCTTCCCGCTTTGACACCTCTGGTTCTCGCTTGTG
TCCGGCTATATTCCGCCATATGACGCGAGTCGCTTTGCGTGCGCCGCACG
CGATTATCCCGTGCAGTCTGTTCATGTAGCACACGAGGATTGTCGCGGTA
GTGTATTTCCACCCCCACCTACTTATATTAACATTATATTGTACTAGACA
TACTCAGCGGCCACCCGTTTACTTTTTTACCATAGACTTTATTTATGCGC
CTATTTGCGATCATTTTTACCACCTCCTAAATTATACCACCCATCTTTTT
CCTACCTACTCCCTCCGCGTTGCCGCCGGTCGCTGTTGTTG
TAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACGGAGGCAGCAAACGTTCACAGCTTTGGCC
ATGGAAGTCTGGACATACCTAAGTGGATCACGAGATAGAGAAAGGAGACA
GGAAGAGGAACGGGGCTGTAAACCTCCAGTAACCAATTCCCTAAATAAGG
TCCCAACTCCGAAATGTTCCAACCACTGTCAAAATAATGCTACCACCCAG
ACCACACATTCAAACAGAAGAACCTGTGAAAATATTTCCCATTCAAATTG
AGGAAACCCATGATAATCTGTGCAGAAAATCTGCAGAGAGGAAAGATTCT
GAGGCCAGAGGCAGGTCGGGCCCAGATTCTCTGTGAAGCCCAGGTAAGGA
CACCAACACAAGCCGAAGACACAGGTGGACTCTCAGATGGTTGTAGTTCT
GGCCATTTGACAGAACCAATGTCAGAAACTTGGATGTCTCAGCAAGCCCA
GTTAACTAAGGTCCATGAGAGTTGATGAGTCATTCTTAGCACTAAGTTCA
GCGGTTCATTACACAACAGTATCCATGCAGAACACACAATGATCATGACC
ACCCCGTTCATTTCCAATTGCCTGACAACATTGTATGACGCGGTGGTTCC
TCTCATGTTGCAGGTATTCTGTGTAATTCAAAGATCATGGTTGTTTTCTG
TCTTCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_a13.g1 MSMg01no126_a13.g1 CHROMAT_FILE:
MSMg01no126_a13.g1 PHD_FILE: MSMg01no126_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:16 2005
         (342 letters)



>mm_chr3_28110527_28111268
          Length = 742

 Score =  557 bits (288), Expect = e-163
 Identities = 330/344 (95%), Gaps = 4/344 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   acggaggcagcaaacgttcacagctttggccatggaagtctggacatacctaagtggatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 acggaggcagcaaacgttcacagctttggccatggaagtctggacatacctaagtggatc 483

                                                                       
Query: 61  ac-gagatagagaaaggagacaggaagaggaacggggctgtaaacctccagtaaccaatt 119
           ||  || |||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 482 acaaag-tagagaaaggagtcaggaagaggaacggggctgtaaacctccggtaaccaatt 424

                                                                       
Query: 120 ccctaaataaggtcccaactccgaaatgttccaaccactgtcaaaataatgctaccaccc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 423 ccctaaataaggtcccaactccgaaatgttccaaccactgtcaaaataatgctaccatcc 364

                                                                       
Query: 180 agaccacacattcaaacagaagaacctgtgaaaatatttcccattcaaattgaggaaacc 239
           |||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 363 agacaacacattcaaacagaagaacctgtggaaatatttcccgttcaaattgaggaaacc 304

                                                                       
Query: 240 catgataatctgtgcagaaaatctgcagagaggaaagattctgaggccagaggca-ggtc 298
           |||||||  |||||||||||| ||||||||||||||||||||||||||||||||| ||| 
Sbjct: 303 catgatagcctgtgcagaaaacctgcagagaggaaagattctgaggccagaggcagggt- 245

                                                       
Query: 299 gggcccagattctctgtgaagcccaggtaaggacaccaacacaa 342
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gggcccagattctctgtgaagcccaggtaaggacaccaacacaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)