Query= MSMg01no126_a22.b1 MSMg01no126_a22.b1 CHROMAT_FILE:
MSMg01no126_a22.b1 PHD_FILE: MSMg01no126_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:18 2005
(503 letters)
>mm_chr3_135935392_135936294
Length = 903
Score = 893 bits (462), Expect = 0.0
Identities = 489/498 (98%), Gaps = 1/498 (0%)
Strand = Plus / Minus
Query: 4 gaattctagattgttgacctctttcattcaactgcatatttgtgtttccttgaacatcac 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 gaattctagattgttgacatctttcattcaactgcatatttgtgtttccttgaacatcac 836
Query: 64 tgaggcacttatttctattttatttaagttctttgagctgattttcatcccttttaagtc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 tgaggcacttatttctattttatttaagttctttgagctgattttcatcccttttaagtc 776
Query: 124 cttgaattctctgataaaatttatggttgttcttttaaatttagtgcccttgaattcatc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 cttgaattctctgataaaatttatggttgttcttttaaatttagtgcccttgaattcatc 716
Query: 184 tgggcaattcttat-aaaaaaatttctataagacgatttggattttgagtttgcggctgc 242
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 715 tgggcaattcttataaaaaaaatttctataagacgacttggattttgagtttgcggctgc 656
Query: 243 ccatttttaccatttgtagttttgtgatgtgacctgatcatgtggagttctgtccttttt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ccatttttaccatttgtagttttgtgatgtgacctgatcatgtggagttctgtccttttt 596
Query: 303 attcccctcagtgtctgtctgatgtttgattttagaaatacctcaggcttttcccatgca 362
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 attccccttagtgtctgtctgatgtttgattttagaaatacctcaggcttttcccatgca 536
Query: 363 tatgaccttgtcctgccttctttgggggcagggggagcggaggttcttttttgcttttgt 422
|||||||||||| ||| |||||||||||||||||||| |||||||||||| |||| ||||
Sbjct: 535 tatgaccttgtcttgctttctttgggggcagggggaggggaggttcttttatgctcttgt 476
Query: 423 tgaaaatctattctatgccattcaactgaattctccttcattctatgcttaaagtgtgaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tgaaaatctattctatgccattcaactgaattctccttcattctatgcttaaagtgtgaa 416
Query: 483 tgtgtgtctcttttttgg 500
||||||||||||||||||
Sbjct: 415 tgtgtgtctcttttttgg 398
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no126_a22.g1 MSMg01no126_a22.g1 CHROMAT_FILE:
MSMg01no126_a22.g1 PHD_FILE: MSMg01no126_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:18 2005
(534 letters)
>mm_chr3_135745244_135746177
Length = 934
Score = 685 bits (354), Expect = 0.0
Identities = 360/362 (99%)
Strand = Plus / Plus
Query: 173 gaaaaagacaaatgtccaaatgaatactagaagtcaaaatgattccactggtttggcatg 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gaaaaagacaaatgtccaaatgaatactagaagtcaaaatgattccactggtttggcatg 432
Query: 233 ttggtgtgactatagtggtcttcagctctactccgcatgataaatgatggttcctaaggt 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ttggtgtgactatagtggtcttcagctctactccgcatgataaatgatggttcctaaggt 492
Query: 293 atttcatcaaatgctgaaagccagaacacactaggaaaatggttctacctttgattggcg 352
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 493 atttcatcaaatgctgaaagcaagaacacactaggaaaatggttctacctttgattggcg 552
Query: 353 tctacagctgactaaagaaacacccaagctagtctcatttacagatctataaaaggggcc 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tctacagctgactaaagaaacacccaagctagtctcatttacagatctataaaaggggcc 612
Query: 413 tctgatacaagttatggaatttgtcttatttgtccttcctggtgccatgagaacaacatc 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tctgatacaagttatggaatttgtcttatttgtccttcctggtgccatgagaacaacatc 672
Query: 473 cccacaggcaatatgatgagggacctttcctgttcttgttaatgaaaataattgatttta 532
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 673 cccacaggcaatatgatgaggggcctttcctgttcttgttaatgaaaataattgatttta 732
Query: 533 ct 534
||
Sbjct: 733 ct 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
