BAC Information

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BAC

Clone NameMSMg01-126B20
Chromosome3 (Build37)
Map Location 99,969,251 - 99,969,765
singlet/doubletsinglet
Overlap geneGdap2
Upstream geneWars2, Tbx15, M6pr-ps, Spag17, LOC623045, Wdr3
Downstream geneLOC195514, 4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1, Trim45, Ttf2, Igsf2, Ptgfrn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126B20.T7 (MSMg01no126_b20.b1)MSMg01-126B20.TJ (MSMg01no126_b20.g1)
ACCAG335020AG335021
length698722
length of high quality
(start - end)
518 (44 - 561)244 (67 - 310)
definitionCHROMAT_FILE: MSMg01no126_b20.b1 PHD_FILE: MSMg01no126_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:22 2005CHROMAT_FILE: MSMg01no126_b20.g1 PHD_FILE: MSMg01no126_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCGCGGAAT
TCTTAATCTAATCCTGGAAATCCTTTCAGATATATGCATCATCTCTTACA
GGCTATATTTCTTACCACACATTCTGTGGAGTGAGACAGTGTTTAGGTTT
CTGCCACCTTTGGGTTTGCTGCTCCGCTTTTGCACAAGCATGGCCATGAG
TTTATGTTGGGAGCAGGCAGGAGTTAAATCTCTTTTTAATGAGAAAAATC
AGTTTCTCTTTGGAGGTGCGGATGGAGCTGCCAAAGAATTCAACCTTGAT
TAACTTTCAGGAAGCTTTCCAGGAAAGGCCTTACCTTTTGCCCCACAGTC
AGCTTTGAGCATTAGTTATCGTTCATTTAGCACTCACACTGACGTCTTCA
GTAGCTGGAGAGAGGCAACGAGCTGTACTGACTGGAGATGATTGGGTGTA
TAGGAGACCTACTGAAGTGCATACACATCAAGGACAGTAATGGGACTTCA
CGGAGAAAGTGATCAACTTAGGTTTCTGTTGACCTTGAAATCAGAGCTGT
GATCGTCGTTGAGGGGGGAAAGCTTTAAGAGGATACAGCTCTGCAACAAA
CACTTCCAGCGAGGTGGAGCCTATAGTAGCGTTACACTCAGGTGGGAGGA
GGACTGAGCTCCCAGGTAAGAAACTAGATGCTTTGCCGTGCACCTGCT
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATGGCAGAGAAGCACC
TGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGAAAATCAAAACA
ACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTC
AGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAGCACTCCTCC
ATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGG
TGGTTCCTTATAATATTGGATATAGTACTAACGGTGGATCCCACAATACC
TCTCCTGGGCATATATCCAGAAGATGTCCCAACTGGTAAGAAGGACACAT
GCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAA
GAACCCAGATGCCCCTCATCAGAGGAATGGATACAGAAAATGTGGTACAT
TTACCCAATGGAGTACTACTCTGTTATTAATAAGAATGAATTTATGAAAT
TCCTAGGTAAATGGAAGGACCTGGAGGGCATCATCCTGATTGAGGTTACC
CAATCACAAAGGAACTCACACAATATGTACTCACTGAAAAGCGGATGTTT
AGTCTAGAAACCTATGATACCCATGATATAATATACTATTTGCTCAACCG
CATGAAACTTCAGAACAATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_b20.b1 MSMg01no126_b20.b1 CHROMAT_FILE:
MSMg01no126_b20.b1 PHD_FILE: MSMg01no126_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:22 2005
         (518 letters)



>mm_chr3_99969048_99969965
          Length = 918

 Score =  959 bits (496), Expect = 0.0
 Identities = 511/516 (99%), Gaps = 2/516 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcttaatctaa-tcctggaaatcctttcagatatatgcatcatctcttacaggcta 62
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcttaatctaagt-ctggaaatcctttcagatatatgcatcatctcttacaggcta 262

                                                                       
Query: 63  tatttcttaccacacattctgtggagtgagacagtgtttaggtttctgccacctttgggt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tatttcttaccacacattctgtggagtgagacagtgtttaggtttctgccacctttgggt 322

                                                                       
Query: 123 ttgctgctccgcttttgcacaagcatggccatgagtttatgttgggagcaggcaggagtt 182
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tcgctgctccgcttttgcacaagcatggccatgagtttatgttgggagcaggcaggagtt 382

                                                                       
Query: 183 aaatctctttttaatgagaaaaatcagtttctctttggaggtgcggatggagctgccaaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaatctctttttaatgagaaaaatcagtttctctttggaggtgcggatggagctgccaaa 442

                                                                       
Query: 243 gaattcaaccttgattaactttcaggaagctttccaggaaaggccttaccttttgcccca 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gaattcaaccttgattaactttcaggaagctttccaggaaaggccttaccttttgcccca 502

                                                                       
Query: 303 cagtcagctttgagcattagttatcgttcatttagcactcacactgacgtcttcagtagc 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cagtcagctttgagcattagttatcgttcatttagcactcacactgacgtcttcagtagc 562

                                                                       
Query: 363 tggagagaggcaacgagctgtactgactggagatgattgggtgtataggagacctactga 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tggagagaggcaacgagctgtactgactggagatgattgggtgtataggagacctactga 622

                                                                       
Query: 423 agtgcatacacatcaaggacagtaatgggacttcacggagaaagtgatcaacttaggttt 482
           ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 623 agtccatacacatcaaggacagtaatgggacttctcggagaaagtgatcaacttaggttt 682

                                               
Query: 483 ctgttgaccttgaaatcagagctgtgatcgtcgttg 518
           ||||||||||||||||||||||||||||||||||||
Sbjct: 683 ctgttgaccttgaaatcagagctgtgatcgtcgttg 718


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)