Query= MSMg01no126_e06.b1 MSMg01no126_e06.b1 CHROMAT_FILE:
MSMg01no126_e06.b1 PHD_FILE: MSMg01no126_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:35 2005
(279 letters)
>mm_chr3_51809721_51810399
Length = 679
Score = 466 bits (241), Expect = e-136
Identities = 266/275 (96%), Gaps = 2/275 (0%)
Strand = Plus / Plus
Query: 4 gaattctcaacgagatccacagaagaagcagagcaggtcctggcaggttcccttggctgg 63
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctcaacgagaagaagagaagaagcagagcaggtcctggcaggttcccttggctgg 263
Query: 64 agcatggcgcctgcatctcaataatgaagtcagggcctggctcccaactctgctctggat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agcatggcgcctgcatctcaataatgaagtcagggcctggctcccaactctgctctggat 323
Query: 124 aaggggggaggtgggtaaatatatcaaagctgagttgagattgctgaaggaagagtcaag 183
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 324 aaggggggaggtgggtaaatatatcaaagctgagttgagcttgctgaaggaagagtcaag 383
Query: 184 tgtacagaactctctgctctttcttccttccttccttccttccttccttccttccttcct 243
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgtacagaactctctggtcttccttccttccttccttccttccttccttccttccttcct 443
Query: 244 tccttccttccttccttcctcctcctcctccttct 278
|||||||||||||||||||| |||||||||||||
Sbjct: 444 tccttccttccttccttcct--tcctcctccttct 476
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no126_e06.g1 MSMg01no126_e06.g1 CHROMAT_FILE:
MSMg01no126_e06.g1 PHD_FILE: MSMg01no126_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:35 2005
(323 letters)
>mm_chr3_51974793_51975515
Length = 723
Score = 586 bits (303), Expect = e-172
Identities = 318/323 (98%)
Strand = Plus / Minus
Query: 1 attttgggcttcttgttagcggtaggtcttctattaataaaccagtaataaataacaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 attttgggcttcttgttagcggtaggtcttctattaataaaccagtaataaataacaatt 464
Query: 61 gttccaaataacaataaacttctagggtaaaatagagatctagaaattagtcataactga 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 463 gttccaaataacaataaacttctaggggaaaatagagatctagaaattagtcacaactga 404
Query: 121 cttggggcatgctggaaattatgaatacactctaatttaaactaagtgctttacagtttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 cttggggcatgctggaaattatgaatacactctaatttaaactaagtgctttacagtttt 344
Query: 181 ttaaaaatttgctcacatctatcttgttatttaatcctcatagaaattgagtggcgagtt 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tttaaaatttgctcacatctatcttgttatttaatcctcatagaaattgagtggcgagtt 284
Query: 241 ttggctaatcattcagatgtgcatatcaaactcacacacagcacgcatacccacattccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 283 ttggctaatcattcagatgtgcatatcaaactcacacacagcacgcatacccacactccc 224
Query: 301 cccacacacaagagagagacaga 323
| |||||||||||||||||||||
Sbjct: 223 cacacacacaagagagagacaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space: 224196
Effective search space used: 224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
