BAC Information

Click to search

BAC

Clone NameMSMg01-126K08
Chromosome3 (Build37)
Map Location 56,000,603 - 56,000,941
singlet/doubletsinglet
Overlap genenone
Upstream geneSohlh2, Dclk1, Mab21l1, 4933417G07Rik
Downstream geneLOC100040139, LOC666585
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126K08.T7 (MSMg01no126_k08.b1)MSMg01-126K08.TJ (MSMg01no126_k08.g1)
ACCAG335406AG335407
length693699
length of high quality
(start - end)
339 (69 - 407)341 (71 - 411)
definitionCHROMAT_FILE: MSMg01no126_k08.b1 PHD_FILE: MSMg01no126_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:07 2005CHROMAT_FILE: MSMg01no126_k08.g1 PHD_FILE: MSMg01no126_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXCTATTCCAAGAGGACCGCGGAAT
TCTTTAGCTCCCTTAGTATAAAATCTTGGCGATTATCAAGTCCTCAGACT
TCCTGTCCTGGAAATGAAATCCCTTGATTGGCTTCATGAAAAAGAAACTA
TATATGAAATTAGCATAATGCTAGTATATAAACACTTAGAAGTGAGATTT
GCATTTTTGTTTCAGTAGACAATGTGCAGTTCTTTCAGTTTAATGACTCC
TTGTGTTCCTCCAAAGTCTCTTGACTGTGCATTTTCCCATCTTCAGCTTT
TGTCAGTTCTGATATCTTAGAAAGGAGAGTAGGACTCTACTACCAACAGT
GAAGCGTTCAGCACTTCATAATCAATCTGTCTTGGCCCCAGACGTCAGAG
AAGCGAACACCCCACTCTCTTATCATTGCAACTTCCATGACTAGAGAGCA
CGTAATAAAGAATAATGTGAACAACAAGAACATCAAAACCTAGGCACAGG
GACCTATGACCCCTGGGAAGCAGGCACATGAGCCTCAGCCGTTTGTTTCT
AGGTTTTTTTTTTGTTGTCGCTTGTTTTTCTGGCCAAAGTTATTTCTCAT
TGCGCGTGCTCCGCTTATCGGCCCATCTCTCCTTATCCCAGATCCTTTCC
TGCTCATGCCTCTTTCTTCCCGGTTGCTTTTCACTCATCTCCG
CAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAACTTTTATCATGAATGG
GTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGT
GGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTT
CGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGG
ATGGATGATTTCTTTAATGTGTTCTTGGATTCGGCTAGCGAGAATTTTAT
TAAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCT
ATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTC
ATAAAATGACCCCCCCAGAGTACCTTCTACTTCTATCTTGTGAAATAGTT
CGTGCAGAACTGTAATTATATCTTCTTTGAAGGTCTGATAGAACTCTGCA
CTAAACCCATCTGGTCCTGGGCTTTTTTTGTCTGCGAGATTATTATTAAC
TGCTTTCTATTTTTTTAGGGTAAATGGGACTGTTTATAAAGGTAACTTGA
TTCCTGATTCAACTTTGGTATCTGTCATCTGTCCACAATTTTGTCCATTT
GTTCATGTTCTCCCGTCTTTGCTTACATTATCTTTTTTTCCCACGCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_k08.b1 MSMg01no126_k08.b1 CHROMAT_FILE:
MSMg01no126_k08.b1 PHD_FILE: MSMg01no126_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:07 2005
         (339 letters)



>mm_chr3_56000403_56001141
          Length = 739

 Score =  656 bits (339), Expect = 0.0
 Identities = 339/339 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaaatcttggcgattatcaagtcctcagacttcctgtcctggaaatgaaatcccttgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 taaaatcttggcgattatcaagtcctcagacttcctgtcctggaaatgaaatcccttgat 480

                                                                       
Query: 61  tggcttcatgaaaaagaaactatatatgaaattagcataatgctagtatataaacactta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tggcttcatgaaaaagaaactatatatgaaattagcataatgctagtatataaacactta 420

                                                                       
Query: 121 gaagtgagatttgcatttttgtttcagtagacaatgtgcagttctttcagtttaatgact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gaagtgagatttgcatttttgtttcagtagacaatgtgcagttctttcagtttaatgact 360

                                                                       
Query: 181 ccttgtgttcctccaaagtctcttgactgtgcattttcccatcttcagcttttgtcagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ccttgtgttcctccaaagtctcttgactgtgcattttcccatcttcagcttttgtcagtt 300

                                                                       
Query: 241 ctgatatcttagaaaggagagtaggactctactaccaacagtgaagcgttcagcacttca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ctgatatcttagaaaggagagtaggactctactaccaacagtgaagcgttcagcacttca 240

                                                  
Query: 301 taatcaatctgtcttggccccagacgtcagagaagcgaa 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 taatcaatctgtcttggccccagacgtcagagaagcgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)