BAC Information

Click to search

BAC

Clone NameMSMg01-126L01
Chromosome3 (Build37)
Map Location 150,099,781 - 150,100,069
singlet/doubletsinglet
Overlap geneLOC100040455
Upstream geneLOC100040620, LOC100040633
Downstream geneLOC100040463, LOC623554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126L01.T7 (MSMg01no126_l01.b1)MSMg01-126L01.TJ (MSMg01no126_l01.g1)
ACCAG335437AG335438
length1,037704
length of high quality
(start - end)
---341 (70 - 410)
definitionCHROMAT_FILE: MSMg01no126_l01.b1 PHD_FILE: MSMg01no126_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:10 2005CHROMAT_FILE: MSMg01no126_l01.g1 PHD_FILE: MSMg01no126_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAATTTATTANNTTTTNNTTNNTTTTTTTTATATATTTTTANNATAATA
AATTTTATAATNCGTTATTATATTNTATTTATATTATTCATATATATATT
TTAAAATNNATAANAACCCATCTTTCTCCACTCATTTCACCTTTTTCTAT
TTTCTCACCTTTCACCTCTCTCCAANTTATTTTNTACTATTCTTATATTA
TATTACTAAACATATATACATATTATAACCTATCAACCATAAATATCTAC
CATACACTTTTTATACATATATTCTACTTAATATTACACTTCATTATCTA
CTACTTATTTCACTACCTATACCCTACATATAATAATACACCTAATTCTT
AGCAGTAGAGATACTCCACCTTTTACTCGTTTACGGCATATATCGTCCCT
CTCTTCATACCATATTATTTATTTTTCATTAGTCTATCACACACACATCT
ATAACATATTATAAGATTCTCACCCAATGAACGGCACACCGGCAACTACC
CTTTCGACCGCCAATCACTATGAGCTCCCGTCGCCTAGTTCGCGCGCCCT
CCTCCCCCCCTATATCTAACATCACCTCCCGCAACTCATACATTGCCCAC
CCCCCCCCCCCTCCCCATCTCTTTCATATATCGACACCATACTTCACCCT
CACCCCTCTCACAACGCCGTCTTTACCGCATTCCGAACGAACCGTGTAAC
ATGATCCTATCGCGTGCGTTTATCGGGAGAGGATAAATATGCGTACGGAC
GGCGACGGAATGAGTCAAACAGCACCAAACCACGAGATAAGATACATCGC
CGACTTCCGGGGGATAAGGGTGTGTTGTGGCCGGTTGATGGACACACAGA
GCCCACGATGAGCGACGGGAGGAGCGACACGCGCGGATGCATGGGTCGTG
TGCGCGACAGTGGCCGGCGAGCGCGCGGCTGCCGGTAGATAGATGGGGAA
CGCTCGTGATCGGTGTTCCTACCCGATAGTTCGCCACATTGTCAACCATA
AAGTACACAGATAGGCTTCGAGACAAGTTAGCTCACG
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCATGTGGAGGGATCAGTTGAAGTGACTTGTT
TGCTCCTTTTTATTACTTAGTTCTCAAGAATATGTGTATGAAAGAAATAT
TTTCTTTGGGATTATTCAAGAATGAGAGAGAGAGAGACAGAGAGAGAGAG
AGACAGAGACAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAGCTCCCAGAAACTCAC
AAGGAGCACCCCCTTCTGGTCTCAGCCATTGACTCATGTATGCATCTACA
ATACGCTTTCTATTCTGTAATGCTGTCAGTTCTCCACTTGTTTCTTTCCT
CTAATAATGTGTTCAGCTTTAATACACTCAGCAATCTGTGTTATCTCTAA
TTATCTCTTTCCCTCTCTCTCATGTGTGTTTCATTGGAATACAGTGCGAT
TTATTTTCCCAGCATGTCCCATGGTTCCATTGCTATTCTCAGCTAAATAA
AACTCTTTTTTGAATAATTTTTTTTATCTACCATTCTCTGGGGGGACCTC
TGTGGCTGACCCCAATTTGGCCTAACCTGAATTAGTGTAGATATACCCCC
GTGGAGGGCCGTTGCCCCTCTCCCCTGTTGAACTGGTTTCTTTTTCCGGT
ATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_l01.g1 MSMg01no126_l01.g1 CHROMAT_FILE:
MSMg01no126_l01.g1 PHD_FILE: MSMg01no126_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:10 2005
         (341 letters)



>mm_chr3_150099360_150100100
          Length = 741

 Score =  400 bits (207), Expect = e-116
 Identities = 282/347 (81%), Gaps = 64/347 (18%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgtggagggatcagttgaagtgacttgtttgctccttttt-attacttagttctcaag 59
           ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 710 catgtggagtgatcagttgaagtgacttgtttgctcctttttaattacttagttctcaag 651

                                                                       
Query: 60  aatatgtgtatgaaagaaatattttctttgggat-----tattcaagaatgagagagaga 114
           ||||||||||||||||||||||||||||||||||     ||||||||||||||||||   
Sbjct: 650 aatatgtgtatgaaagaaatattttctttgggattattctattcaagaatgagagag--- 594

                                                                       
Query: 115 gagacagagagagagagagacagagacagagagagagagagacagagagagagagagaga 174
                                                      |||||||||||||||||
Sbjct: 593 -------------------------------------------agagagagagagagaga 577

                                                                       
Query: 175 gagagagagagagagagagagagagagagagagagaagaaagctcccagaaactcacaag 234
           |||||||||||||||||||||||||||||||||||            |||||||||||||
Sbjct: 576 gagagagagagagagagagagagagagagagagag------------agaaactcacaag 529

                                                                       
Query: 235 gagcacccccttctggtctcagccattgactcatgtatgcatctacaatacgctttctat 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gagcacccccttctggtctcagccattgactcatgtatgcatctacaatacgctttctat 469

                                                          
Query: 295 tctgtaatgctgtcagttctccacttgtttctttcctctaataatgt 341
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tctgtaatgctgtcagttctccacttgtttctttcctctaataatgt 422


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 112
Number of extensions: 33
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)