Query= MSMg01no126_m18.b1 MSMg01no126_m18.b1 CHROMAT_FILE:
MSMg01no126_m18.b1 PHD_FILE: MSMg01no126_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:19 2005
(364 letters)
>mm_chr3_38895150_38895912
Length = 763
Score = 605 bits (313), Expect = e-177
Identities = 350/367 (95%), Gaps = 14/367 (3%)
Strand = Plus / Minus
Query: 4 ggaattcttt-aatat---tcccnctggaaaccacctcataa-actacattttctaac-a 57
|||||||||| ||||| || ||||||||||||||||| ||||||||||||||| |
Sbjct: 584 ggaattctttaaatatttgtc---atggaaaccacctcataacactacattttctaacaa 528
Query: 58 aatatattccttcttttcctgtcagcaggagcgtagattgagacatctctggtctggctg 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 aatatattccttcttttcctgtcagcaggagcgtagattgagacatctctggtctggctg 468
Query: 118 tgggatgatgaaagcctagagattaattaatgactttgccaatttcctacaattttgttg 177
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 467 tgggatgatgaaagcctagag----attaatgactttgccaatttcctacaattttgttg 412
Query: 178 taaaatgtataatgtaagagattcaaaatcaaatagtagc-ttttttttctgcatatttt 236
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 411 taaaatgtataatgtaagagattcaaaatcaaatagtagctttttttttctgcatatttt 352
Query: 237 ctgaagtaaagacatcttcccactgtggccaatttagtaatatcagaaatattttcttca 296
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 351 ctgaagtaaagacatcttcccactgtggccaatttagtaatagcagaaatattttcttca 292
Query: 297 catttagcattactcaatacttgaccatggcccagctctggctgcagccatggacagaag 356
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 291 catttagcattactcaatacttgaccatggcccatctctggctgcagccatggacagaag 232
Query: 357 gacacag 363
|||||||
Sbjct: 231 gacacag 225
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 763
Length adjustment: 9
Effective length of query: 355
Effective length of database: 754
Effective search space: 267670
Effective search space used: 267670
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no126_m18.g1 MSMg01no126_m18.g1 CHROMAT_FILE:
MSMg01no126_m18.g1 PHD_FILE: MSMg01no126_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:19 2005
(486 letters)
>mm_chr3_38709014_38709899
Length = 886
Score = 932 bits (482), Expect = 0.0
Identities = 485/486 (99%)
Strand = Plus / Plus
Query: 1 aagaaaaggtttcagagaacggtgaagaatgagagttgaaatagaagccaaggtatgctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaaaaggtttcagagaacggtgaagaatgagagttgaaatagaagccaaggtatgctg 260
Query: 61 tgggttttatgtgtacatgagtatttatgaaaatacatgctgtgttcataatttataagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggttttatgtgtacatgagtatttatgaaaatacatgctgtgttcataatttataagc 320
Query: 121 acacacatgtgcaatgaatgttcagccaggtacattggcatggtgaaaacaactactagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacacatgtgcaatgaatgttcagccaggtacattggcatggtgaaaacaactactagg 380
Query: 181 gttacatgagtgttagggacacaaataaatcatgagggcctcaaggaagattgataagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttacatgagtgttagggacacaaataaatcatgagggcctcaaggaagattgataagag 440
Query: 241 ggtctgcagctgcgtgtgtgataggcaaggcaaccagtggttcccacactggttcccaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtctgcagctgcgtgtgtgataggcaaggcaaccagtggttcccacactggttcccaca 500
Query: 301 aagcacaccataccctttcacctactaagtgtcttaacttcatataacactggattatgg 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 aagcacaccataccctttcacctactaagtgtcttaacttcatataagactggattatgg 560
Query: 361 attatagttagggctggcttctaagaaaacctctgtctattccagaaataagatggcccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attatagttagggctggcttctaagaaaacctctgtctattccagaaataagatggcccc 620
Query: 421 agattgacccagggtgatcaagaacaggacttacctccagataccacaggcaggtctttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agattgacccagggtgatcaagaacaggacttacctccagataccacaggcaggtctttg 680
Query: 481 cagcat 486
||||||
Sbjct: 681 cagcat 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
