Query= MSMg01no127_a13.b1 MSMg01no127_a13.b1 CHROMAT_FILE:
MSMg01no127_a13.b1 PHD_FILE: MSMg01no127_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:39 2005
(510 letters)
>mm_chr3_141356196_141357105
Length = 910
Score = 951 bits (492), Expect = 0.0
Identities = 507/514 (98%), Gaps = 4/514 (0%)
Strand = Plus / Plus
Query: 1 agcaatttgtacatatgaatgagactgaatgtacctatgcagtaatttcccttaataaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 agcaatttgtacatatgaatgagactgaatgtacctatgcagtaatttcccttaataaaa 256
Query: 61 acattgaatcatgatgcactgtaatctttactgatgttagaatcattaatcatgattcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 acattgaatcatgatgcactgtaatctttactgatgttagaatcattaatcatgattcca 316
Query: 121 catcttacaagtgtgcctacatgtattaaatagtttgcactcatgttcttcctctggaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 catcttacaagtgtgcctacatgtattaaatagtttgcactcatgttcttcctctggaaa 376
Query: 181 ttgtttagccacggttacatgaatgtatcttttgaagagaatatatttgtatgtatatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttgtttagccacggttacatgaatgtatcttttgaagagaatatatttgtatgtatatat 436
Query: 241 acatacatgcatgtatgcatacagacatacaaacatacatgcatacatacatacatacat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 acatacatgcatgtatgcatacagacatacaaacatacatgcatacatacatacatacat 496
Query: 301 aca----cccatacacacacacacatttatataaaagcagagaacacaccttgcctggaa 356
||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 497 acatacacccatacacacacacacatttatataaaagcagagaacaaactttgcctggaa 556
Query: 357 atataagcagacaagtgactgaagctgcctgttcagtagtcaatattatgtagttatata 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 atataagcagacaagtgactgaagctgcctgttcagtagtcaatattatgtagttatata 616
Query: 417 aacatctcaggggattggagttggggtgggataccatctctttatttccattttctttct 476
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 617 aacatctcaggggattggagttggggtgggataccatctctttattttcattttctttct 676
Query: 477 ggtgctagagtggaagtaacatgatgatattaca 510
||||||||||||||||||||||||||||||||||
Sbjct: 677 ggtgctagagtggaagtaacatgatgatattaca 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no127_a13.g1 MSMg01no127_a13.g1 CHROMAT_FILE:
MSMg01no127_a13.g1 PHD_FILE: MSMg01no127_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:39 2005
(560 letters)
>mm_chr3_141446146_141447106
Length = 961
Score = 735 bits (380), Expect = 0.0
Identities = 407/416 (97%), Gaps = 1/416 (0%)
Strand = Plus / Minus
Query: 146 gggttaatccccagccctgaatatgtgcagtatcaggaatggtgatgtacatttgtaatc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 gggttaatccccagccctgaatatgtgcagtatcaggaatggtgatgtacatttgtaatc 902
Query: 206 tatacttgggaggtagaagcagaatgatcagaagtttatggttatcatcagttacatagc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 tatacttgggaggtagaagcagaatgatcagaagtttatggttatcatcagttacatagc 842
Query: 266 aacttcatgaatagcctggtaaagatgggacctgttttagatcatcattattgtcattgt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 aacttcatgaatagcctggtaaagatgggacctgttttagatcatcattattgtcattgt 782
Query: 326 taccatcatcaccaccattaaaatatacaatatagcaagactctgcggaccatcactaga 385
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 781 taccatcatcaccatcattaaaatatacaatatagcaagactctgcagaccatcactaga 722
Query: 386 gaagtaagtagcagcgaatcatggaggcctacgggtccacaaagaacttttaattttatt 445
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 721 gaagtaaggagcagcgaatcatagaggcctacgggtccacaaagaacttttaattttttt 662
Query: 446 acaaacaaaataaaaactatatgtttggaacatg-aaaaaaaacccacattggattctct 504
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 661 acaaacaaaataaaaactatatgtttggaacatgaaaaaaaaacccacgttggattctct 602
Query: 505 acagagaatgaattacagaaggatcaggaccataatatctctgttaatgtacagct 560
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 601 acagagaatgaattacagaaggatcaggtccatactatctctgttaatgtacagct 546
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 961
Length adjustment: 10
Effective length of query: 550
Effective length of database: 951
Effective search space: 523050
Effective search space used: 523050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
