BAC Information

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BAC

Clone NameMSMg01-127K09
Chromosome3 (Build37)
Map Location 51,809,949 - 51,962,578
singlet/doubletdoublet
Overlap geneLOC433587
Upstream geneCcrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684, Mgst2, Maml3
Downstream geneLOC100039788, LOC671890, Olfr1398-ps1, Foxo1, LOC100039762, LOC100039832, Cog6, Lhfp, LOC100039808
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127K09.T7 (MSMg01no127_k09.b1)MSMg01-127K09.TJ (MSMg01no127_k09.g1)
ACCAG336130AG336131
length742704
length of high quality
(start - end)
109 (72 - 180)281 (123 - 403)
definitionCHROMAT_FILE: MSMg01no127_k09.b1 PHD_FILE: MSMg01no127_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:28 2005CHROMAT_FILE: MSMg01no127_k09.g1 PHD_FILE: MSMg01no127_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,809,949 - 51,810,057)(51,962,298 - 51,962,578)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCAACTACAAGAAGAGAAGAAGCAGAGCAGGTCCTGGCAGGTTCCCTT
GGCTGGAGCATGGCGCCTGCATCTCAATAATGAAGTCAGGGCCTGGCTCC
CAACTCTGCTCTGGATAAGGGGGGAGGTGGGTAAATATATCAAAGCAGAC
TTGAGAGTGCTGAATGAATATTCACCCCTATTCATCTCTCTGCTCTTTTA
TATTTCCGCCCTATTTTCTGTTTATTTTCCATTTCTTCCTTCCCATGTTA
TGTTTCTTTTTCTTCTTTCGCATACATACTTCTCCGTCCATTTTCGTTTC
TTACCTTCCCTGCTCTATAGCACTGTGTATTCACCCCTATATTCTTATTT
TTGTTCCCCCCCCCCCCCTTTTGGCCTACCCCTCATCTCGTTTCGTTATT
CCGATAACCAACTCTTTGCTGTAGCCTTTATTCACATTCCTTTCATTTTT
CTACATTTCTCAATGTCTTTCCTTCACTACATCCGTTCATATCTTCTACT
CTCCCCCACTTCCCGACATTTTCTATATCTTCTTCAATTTTCGCTCATTC
TTTTTCTTCATTCCTCTCCTTCCCTTCTTTTTCCTTTCCTTTCTCCCCTC
CTTCCCCCCCTCCTTTTCCACTTTTCCCAATATTTACTTCTCCTTTTTCT
TATTTCTTCGATACTTTTGATCCGTCACATTTCACATTGCTA
TAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATCAGCCGTCATACAGGTCTGGAAGATTTCA
AGCTCCAGGAAGGACTCGAGTTGGGTGACATGCAAATTACAGCTTTCTGA
GGCTCTCAGGAGAGGATCCAGCTACACTGTGCCCTTACTCCTGGCCCACA
GAGGCTGAGATCATGAATGGGTACAATTTAAAGCCAAGCCTGAGACAATT
TATAATGCAACCATAGAACATCCACATATCTACTGGTGGCCAGCTCTTTC
CCCATGAAGTCTTCTTCCCAAGAGCCACAAACATCCCTATCAGACCGACC
CCACCTCCACACTCTGGTTGCCAGGCTCAAAACTAATGATGCCTGTTAAC
AAAACCCCAACGATATATATTGTCTTGAAAAAAAAGAAGGCAGATATGAT
ACACTGAACATCTATCAAGTCCAAAAGTTAGCTCTAAACTAACTACCAGC
AGATGCTAGGAGAGATCCCCAGGATTAGATGGTGAAAGAGATTGACCAAT
CAAATTATGTGGAGGACAGGATAAACAAGAATTTCTTATCTTACGAGACT
TTTCTTCCTATTCAGTGCTCTAGCAAGGGCCTCAGGTTACAGAATCGGCC
GCATGATCCTAGAGAAAGTGCCAGGTAATGCTAAGGAAAGGGCAAATTCT
CACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_k09.b1 MSMg01no127_k09.b1 CHROMAT_FILE:
MSMg01no127_k09.b1 PHD_FILE: MSMg01no127_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:28 2005
         (109 letters)



>mm_chr3_51809749_51810257
          Length = 509

 Score =  211 bits (109), Expect = 1e-59
 Identities = 109/109 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagcagagcaggtcctggcaggttcccttggctggagcatggcgcctgcatctcaataat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagcagagcaggtcctggcaggttcccttggctggagcatggcgcctgcatctcaataat 260

                                                            
Query: 61  gaagtcagggcctggctcccaactctgctctggataaggggggaggtgg 109
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagtcagggcctggctcccaactctgctctggataaggggggaggtgg 309


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 109
Length of database: 509
Length adjustment: 8
Effective length of query: 101
Effective length of database: 501
Effective search space:    50601
Effective search space used:    50601
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
Query= MSMg01no127_k09.g1 MSMg01no127_k09.g1 CHROMAT_FILE:
MSMg01no127_k09.g1 PHD_FILE: MSMg01no127_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:28 2005
         (281 letters)



>mm_chr3_51962098_51962778
          Length = 681

 Score =  536 bits (277), Expect = e-157
 Identities = 280/281 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggtgacatgcaaattacagctttctgaggctctcaggagaggatccagctacactgtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gggtgacatgcaaattacagctttctgaggctctcaggagaggatccagctacactgtgc 422

                                                                       
Query: 61  ccttactcctggcccacagaggctgagatcatgaatgggtacaatttaaagccaagcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ccttactcctggcccacagaggctgagatcatgaatgggtacaatttaaagccaagcctg 362

                                                                       
Query: 121 agacaatttataatgcaaccatagaacatccacatatctactggtggccagctctttccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agacaatttataatgcaaccatagaacatccacatatctactggtggccagctctttccc 302

                                                                       
Query: 181 catgaagtcttcttcccaagagccacaaacatccctatcagaccgaccccacctccacac 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 catgaagccttcttcccaagagccacaaacatccctatcagaccgaccccacctccacac 242

                                                    
Query: 241 tctggttgccaggctcaaaactaatgatgcctgttaacaaa 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tctggttgccaggctcaaaactaatgatgcctgttaacaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)