Query= MSMg01no127_o24.b1 MSMg01no127_o24.b1 CHROMAT_FILE:
MSMg01no127_o24.b1 PHD_FILE: MSMg01no127_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:52 2005
(610 letters)
>mm_chr3_75042861_75043871
Length = 1011
Score = 1135 bits (587), Expect = 0.0
Identities = 602/607 (99%), Gaps = 1/607 (0%)
Strand = Plus / Minus
Query: 5 gaattcagtagttatagcagccctacatcatgatgactacatctgaaatatgtacctttt 64
|||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 811 gaattcagtagttaaagtagccctacatcatgatgactacatctgaaatatgtaactttt 752
Query: 65 tcttt-aataaatatggacctggcattaaataaatgaatatgaagtaattttcagtgtca 123
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 tctttaaataaatatggacctggcattaaataaatgaatatgaagtaattttcagtgtca 692
Query: 124 taaaactttttgaaaacatcagggttgggaaaggtatgtcaccatacgttaaatatcatt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 taaaactttttgaaaacatcagggttgggaaaggtatgtcaccatacgttaaatatcatt 632
Query: 184 aaaataatgctttttataaacattactagatgatacatttttatttaaatcatatattgt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aaaataatgctttttataaacattactagatgatacatttttatttaaatcatatattgt 572
Query: 244 ttctgtctttaagacaaaatattcattcagctgtgagtattccagtggacatactgaaat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ttctgtctttaagacaaaatattcattcagctgtgagtattccagtggacatactgaaat 512
Query: 304 tgacttctattgacactatagactttagggaagattttagaggcatctgtgatatgagga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tgacttctattgacactatagactttagggaagattttagaggcatctgtgatatgagga 452
Query: 364 agcaggaagccaaataaggagtaattaattttgggggataagtttataaaattctcctga 423
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 agcaggaagtcaaataaggagtaattaattttgggggataagtttataaaattctcctga 392
Query: 424 attagataatcacctggaaacccataaagacatagagaaaactcaagggtggtatcatta 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 attagataatcacctggaaacccataaagacatagagaaaactcaagggtggtatcatta 332
Query: 484 gaatttttcactttaaacttcttaaaataaaataagttctcacagcccctgagcatagaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gaatttttcactttaaacttcttaaaataaaataagttctcacagcccctgagcatagaa 272
Query: 544 atttaccctctgagggaaatagaataatgggccagtttgggaatggcttcctgcatttgg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 atttaccctctgagggaaatagaataatgggccagtttgggaatggcttcctgcatttgg 212
Query: 604 agaggat 610
|||||||
Sbjct: 211 agaggat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1011
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1001
Effective search space: 600600
Effective search space used: 600600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no127_o24.g1 MSMg01no127_o24.g1 CHROMAT_FILE:
MSMg01no127_o24.g1 PHD_FILE: MSMg01no127_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:52 2005
(595 letters)
>mm_chr3_74966570_74967564
Length = 995
Score = 1120 bits (579), Expect = 0.0
Identities = 591/595 (99%)
Strand = Plus / Plus
Query: 1 aatgacaagtaaaaactttagattattgtagtcaacaatgatgttagtacatctttaaat 60
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 201 aatgacaagtaaaaactttagattattgcagtcaacaatgatgttattacatctttaaat 260
Query: 61 taaaactttcagaaaccaagccctttaatattttgtcagaagcatgtgatttcacatgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaactttcagaaaccaagccctttaatattttgtcagaagcatgtgatttcacatgat 320
Query: 121 ccactgttatctgtctgtttacctaagaatgctttaggcattagaaaattaagcatataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccactgttatctgtctgtttacctaagaatgctttaggcattagaaaattaagcatataa 380
Query: 181 gggtggtaagagaaccagaataattgttctattatttgttctattacacgttgattttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggtggtaagagaaccagaataattgttctattatttgttctattacacgttgattttta 440
Query: 241 actctaattatggttctacacactcaacatcattaatccaaataaaaaaccatctgaata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actctaattatggttctacacactcaacatcattaatccaaataaaaaaccatctgaata 500
Query: 301 tctaagtaaacccaatgttttattggtaaatattctttcctcttccccagtcatcatctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctaagtaaacccaatgttttattggtaaatattctttcctcttccccagtcatcatctt 560
Query: 361 tcacacattagaagatttaaaattttatagtgatgtatctgaaataccattgaatacatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcacacattagaagatttaaaattttatagtgatgtatctgaaataccattgaatacatt 620
Query: 421 tctggagtcaagtttctcctctagttctgtagggccaataagatggctcaacaattagat 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 tctggagtcaagtttctcctctagttctgtagggccaataagatggctcagcaattagat 680
Query: 481 agaagctcttctcaataagcctaagaccctaaatctgagcctaaaaatatacagggtagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaagctcttctcaataagcctaagaccctaaatctgagcctaaaaatatacagggtagg 740
Query: 541 atgagggaacctactctcttttcattaatcttctgatctccacatgtcacacaca 595
||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 741 atgagggaacctactctcttttcattaatcttccgatctccacatgtcacacaca 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
