BAC Information

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BAC

Clone NameMSMg01-128D19
Chromosome3 (Build37)
Map Location 100,302,694 - 100,302,976
singlet/doubletsinglet
Overlap geneOTTMUSG00000007026
Upstream geneM6pr-ps, Spag17, LOC623045, Wdr3, Gdap2, LOC195514, 4930431B09Rik
Downstream geneMan1a2, Vtcn1, Trim45, Ttf2, Igsf2, Ptgfrn, LOC668578, LOC668583, LOC669017, Cd2, LOC100043490, Igsf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128D19.T7 (MSMg01no128_d19.b1)MSMg01-128D19.TJ (MSMg01no128_d19.g1)
ACCAG336563AG336564
length686680
length of high quality
(start - end)
283 (132 - 414)546 (78 - 623)
definitionCHROMAT_FILE: MSMg01no128_d19.b1 PHD_FILE: MSMg01no128_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:15 2005CHROMAT_FILE: MSMg01no128_d19.g1 PHD_FILE: MSMg01no128_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAACCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCAAGTCTCCTTTCTGGCCATTCTCACGTCTAGTGGGG
GTTGAAGATAAAAAATGTTAAGTGTGCCCACTGGGCACGCTTGACTGGTG
CCCAGCTCTCGGTAATATGCTGCCTCCTACTTGGGTTTAACTGATGTCCC
AACCCCGAGGCAGTTGACCTGGGGCTGCCAGTTGCCTTGCCTCACATTGG
CCAAGCTGGGGTCATTCAGGGTAAAGCAGTGTCCTAGCCTGTGCTCTACT
CAGCTTATGAAGGAAGAGAAGATAGCCCTCCCTCTGTGTGGGCTGGATGG
TTACAGAACCCCCGCCACTGTTTGCTGCCCCGAGATGACCGAATCGTGTG
GTGACTGACACACGGGCGCACGCAGAGGCACAGAATCAGGACCACCAAAC
TGGAGGCCCCATTGCTTCCAAGCCTCTCTACTCCAACAGTACCACCCTCT
CTAAGTGTTCTAGGCAATTATAGTTTTGATACCTAGATGAATATTTTTTT
TTCCAACTCAAACCTTGTGAGCTTACAGGTAAAGCAAGACTGAAAACATC
ACTGTATACCATTTAAGGGCTGCCCTGCTCTTTTATCATCTGTTCTGAAG
CTATTCTTCTCTGTTCATCTGTCCTGTGGATAATCG
NATCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATTGTGTAAATGAACCACATTT
TCTGTATCCATTCTTCCATTGCCGAACATCTGGGTTGTTTCTAGCTTCTG
GCTATCATAGATAAGGCTATTATGAACATGGTGAAACATGTGCCCCTGTG
GCATGGTGGGGCATCTTTTGTGTATATGCCCAAGAGTGGTATAGTTGGGT
CTTCAGGTAGACCTATCTCCAATTTTCTGAGGAACCTCCAGATTAATTCC
AGAGTGGTTGTACCATGTTGCAATCCCATCAGCAATGGAGGAGTGTTCCT
CTTTCTCCATATCCTTGCCAATACGTGCTGTCACCTGAGTTATTGATCTT
AGCCATTCTGATTGCCAAAAGGTGAAATCGCAGGTGTACATAGTTTTGAT
TTGCTTTTCCCTGATGACTAAGGACTTTAAACATTTCTTTAAGTGCTTCC
CAGCCATTCCTCTGTTGTGAATTCTCTGTTTAGTTCTATACCCCATTTTT
TGATTGAGTTGTTTGGTTTTTTTGGAGGTTAGCTTCTTGAGTTCTTTATA
TCTTTGGATATTAGCCCTCTATCAGATGTGAGGTTAGTGAAGATTTTTTC
CCATCCTGCAGGTTGCTAATCTGCCTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_d19.b1 MSMg01no128_d19.b1 CHROMAT_FILE:
MSMg01no128_d19.b1 PHD_FILE: MSMg01no128_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:15 2005
         (283 letters)



>mm_chr3_100302494_100303176
          Length = 683

 Score =  516 bits (267), Expect = e-151
 Identities = 279/283 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggcacgcttgactggtgcccagctctcggtaatatgctgcctcctacttgggtttaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggcacgcttgactggtgcccagctctcggtaatatgctgcctcctacttgggtttaac 260

                                                                       
Query: 61  tgatgtcccaaccccgaggcagttgacctggggctgccagttgccttgcctcacattggc 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatgtcccaacccctaggcagttgacctggggctgccagttgccttgcctcacattggc 320

                                                                       
Query: 121 caagctggggtcattcagggtaaagcagtgtcctagcctgtgctctactcagcttatgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagctggggtcattcagggtaaagcagtgtcctagcctgtgctctactcagcttatgaa 380

                                                                       
Query: 181 ggaagagaagatagccctccctctgtgtgggctggatggttacagaacccccgccactgt 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaagagaagagagccctccctctgtgtgggctggatggttacagaacccccgccactgt 440

                                                      
Query: 241 ttgctgccccgagatgaccgaatcgtgtggtgactgacacacg 283
           |||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 441 ttgctgccccgagatgaccgaggcgtgtggtgactgacacacg 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)