Query= MSMg01no128_e17.b1 MSMg01no128_e17.b1 CHROMAT_FILE:
MSMg01no128_e17.b1 PHD_FILE: MSMg01no128_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:20 2005
(565 letters)
>mm_chr3_154516752_154517716
Length = 965
Score = 1013 bits (524), Expect = 0.0
Identities = 551/560 (98%)
Strand = Plus / Minus
Query: 6 gaattcatgcatgttccgagaaagcatgcacatctattgtgagcaaagagatgaagggtc 65
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gaattcatgcatgctgagagaaagcatgcacatctattgtgagcaaagagatgaagggtc 544
Query: 66 tgctggttttgatcacactgaagtcagtgccaggttaaacttctagagcagataacattt 125
||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 543 tgctggttttgataacactgaagtcagtgccaggttaaacctctagagcagatagcattt 484
Query: 126 gataaagagatctgtaaatataaacaactaacatcttgttattttgcccattgcttcatt 185
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gataaagagatctgtagatataaacaactaacatcttgttattttgcccattgcttcatt 424
Query: 186 tcaacattcaattttggagaatttcagacattcttactatgttaacatcatttactctcc 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tcaacattcaattttggagaatttcagacattcttactatgttaacatcatttactctcc 364
Query: 246 cccttgcacctctgaaactcctacctagttacccccagactccctctcaaaattcatgac 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 cccttgcacctctgaaactcctacctagttacccccagactccctctcaaaattcatgac 304
Query: 306 acagtcgaagtccccaaagtctgtggtactggcttaagtgtctacaccgactaaaggcat 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 acagtcgaagtccccaaagtctgtggtactggcttaagtgtctacaccgactaaaggcat 244
Query: 366 ttccacacagtagcagaaacataaggaagcatgctttgttgttttgttttgttttgtttt 425
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ttccagacagtagcagaaacataaggaagcatgctttgttgttttgttttgttttgtttt 184
Query: 426 ttaaacagtgcctgtgtaatcaagactggcctggaatttgcgatggagaccagactgact 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 ttaaacagtgcctgtgtaatcaagactggcctggaatttgcgatggagaccagactgact 124
Query: 486 ttggtaaataatgtcaacctttgtagctgcaatatgaatttatataagaaattatagatg 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ttggtaaataatgtcaacctttgtagctgcaatatgaatttatataagaaattatagatg 64
Query: 546 attctaatcctaacactaaa 565
||| ||||||||||||||||
Sbjct: 63 attttaatcctaacactaaa 44
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no128_e17.g1 MSMg01no128_e17.g1 CHROMAT_FILE:
MSMg01no128_e17.g1 PHD_FILE: MSMg01no128_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:20 2005
(386 letters)
>mm_chr3_154357541_154358331
Length = 791
Score = 661 bits (342), Expect = 0.0
Identities = 378/392 (96%), Gaps = 7/392 (1%)
Strand = Plus / Plus
Query: 1 agtttgtcctaaggtgagagagtcttattaaatagatcaggctgttctccaactgaaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtttgtcctaaggtgagagagtcttattaaatagatcaggctgttctccaactgaaatc 260
Query: 61 ctcttgcttctgtgtctctagaggaatattgggatcttag--atgtgtgtcactacatct 118
||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 ctcctgcttctgtgtctcgagaggaatattgggatcttagatatgtgtgtcactacatct 320
Query: 119 ggcttcctttaattcttaaaatgtcctaaaaa-ctaagatattccatacattaaagtttt 177
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 ggcttcctttaattcttaaaatgtcctaaaaatctaagatattccatacattaaagtttt 380
Query: 178 ggtactagacactggtctaatgaagctgtctagacgaatatgagtaagttgagaagtcaa 237
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 ggtactagacactggtttaatgaagctgtctagacgaatgtgagtaagttgagaagtcaa 440
Query: 238 aaatgttatggtcataagttaggactttctgtcaatatgaaaaaaaaa---ccccacaga 294
|||||||| || |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 aaatgtta-gggcataagttaggactttctgtcaatatgaaaaaaaaaaacccccacaga 499
Query: 295 aaatggtatctttatttcttcaggacatttacagtttaagatcccagcacacaacatcag 354
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 500 aaatggtatctttatttcttcaggacatttacagtttaagatcccagcagacaacatcag 559
Query: 355 gaggaatgtttagaatcaaggggtacacttgg 386
|||||||||||||||||||||||| |||||||
Sbjct: 560 gaggaatgtttagaatcaaggggtgcacttgg 591
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 791
Length adjustment: 9
Effective length of query: 377
Effective length of database: 782
Effective search space: 294814
Effective search space used: 294814
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
