Query= MSMg01no128_f20.b1 MSMg01no128_f20.b1 CHROMAT_FILE:
MSMg01no128_f20.b1 PHD_FILE: MSMg01no128_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:25 2005
(626 letters)
>mm_chr3_45050553_45051580
Length = 1028
Score = 1137 bits (588), Expect = 0.0
Identities = 616/626 (98%), Gaps = 3/626 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaagatgagttctcttttctcatttaaacttctatagaaagccccagagacaca 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaagatgagttttcttttctcatttaaacttctatagaaagccccagagacaca 263
Query: 64 cccagaatgtgtccctttatagagacctaaataatagagatcctaaatctattcaagtca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cccagaatgtgtccctttatagagacctaaataatagagatcctaaatctattcaagtca 323
Query: 124 ccaggcaaggtcaacttccatatatgggtgaagtaaaaacaaacactgttataccatcat 183
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 324 ccaggcaaggtcaacttccatatatgggtgaagtaaaagcaaacactgttataccatcat 383
Query: 184 ccagactaaataactgagacatacatcttctgaaactaatatttcttgctccttttttt- 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccagactaaataactgagacatacatcttctgaaactaatatttcttgctcctttttttt 443
Query: 243 -cccaaattaagctctgagcatcctaaagctgaagcaaaccaaagactgagcatctattg 301
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccccaaactaagctctgagcatcctaaagctgaagcaaaccaaagactgagcatctattg 503
Query: 302 agaaagtgccatatccggggatccataggatccatccataatcggcttccaaacgctgac 361
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 504 agaaagtgccatatccggggatccataggatctatccataatcggcttccaaacgctgac 563
Query: 362 accattgcacacactagcaagattttgctgaaaggactcagatatatctgtctcttgtga 421
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 564 accattgcacacactagcaagattttgctgaaaggactcagatatagctgtctcttgtga 623
Query: 422 gactatgctggggcctagcaaacacagaagtggatgctcacagtcagctattggatggat 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gactatgctggggcctagcaaacacagaagtggatgctcacagtcagctattggatggat 683
Query: 482 cacagggcccccaatggaggagctagagaaagtaaccaaggagctgaagggaactgcaac 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cacagggcccccaatggaggagctagagaaagtaaccaaggagctgaagggaactgcaac 743
Query: 542 cctataggtggaacaacaatataaactaaccagtacccccc-agagctcatgtctctagc 600
||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||
Sbjct: 744 cctataggtggaacaacaatataaactaaccagtacccccccagagatcgtgtctctagc 803
Query: 601 tgcatatgtatcagaagatggcctag 626
||||||||||||||||||||||||||
Sbjct: 804 tgcatatgtatcagaagatggcctag 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1028
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1018
Effective search space: 627088
Effective search space used: 627088
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no128_f20.g1 MSMg01no128_f20.g1 CHROMAT_FILE:
MSMg01no128_f20.g1 PHD_FILE: MSMg01no128_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:26 2005
(548 letters)
>mm_chr3_45129595_45130542
Length = 948
Score = 1021 bits (528), Expect = 0.0
Identities = 543/548 (99%)
Strand = Plus / Minus
Query: 1 caagttagaacttcagaacaaccttcatcactggaaaaaaaaatcctaaagtactaactg 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 748 caagttagaacttcagaacaaccttcatcactgggaaaaaaaatcctaaagtactaactg 689
Query: 61 taaatatttagaacctacacaatgtgaccaagtcatggagaatgaccaggctattgttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 taaatatttagaacctacacaatgtgaccaagtcatggagaatgaccaggctattgttct 629
Query: 121 aatacagcacctgataatataggcatgtttacatatagcgtttattcttctaagatacac 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 628 aatacagcacctgataatataggcatgtgtacatatagcgtttattcttctaagatacac 569
Query: 181 tgccatcagcacatatagtaagcatcttctgctcaaacactgccaagtgtgctgaatccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tgccatcagcacatatagtaagcatcttctgctcaaacactgccaagtgtgctgaatccc 509
Query: 241 cttgcagatattttcaattacaaagtgattggcaatgtggatatcaaataaagaccccat 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cttgcagatattttcaattataaagtgattggcaatgtggatatcaaataaagaccccat 449
Query: 301 ggcagagaggctgatttagaagggatgctctatttaagcattctgactaaagacttcaat 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 448 ggcagagaggctgatttagaagggatgctctatttaagcattttgactaaagacttcaat 389
Query: 361 ctaatatgatcacatttaggttacattttcaaagacattcatacattatatggaagcctg 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 388 ctaatatgatcacatttaggttacattttcaaagagattcatacattatatggaagcctg 329
Query: 421 gacttgattctttcaaatggccacagaatctcttggaagcagtggtgctcttagttaatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gacttgattctttcaaatggccacagaatctcttggaagcagtggtgctcttagttaatt 269
Query: 481 ttactgaaattctctagtagttatatctggctgtttgaatgggctgtaacctccaacgtc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttactgaaattctctagtagttatatctggctgtttgaatgggctgtaacctccaacgtc 209
Query: 541 acagttga 548
||||||||
Sbjct: 208 acagttga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
