BAC Information

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BAC

Clone NameMSMg01-128G15
Chromosome3 (Build37)
Map Location 36,565,031 - 36,565,449
singlet/doubletsinglet
Overlap geneTrpc3
Upstream geneLOC625963, Atp11b, LOC665667, Dcun1d1, Mccc1, BC050811, Acad9, D3Ertd254e, Gpr103, Anxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7
Downstream gene4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128G15.T7 (MSMg01no128_g15.b1)MSMg01-128G15.TJ (MSMg01no128_g15.g1)
ACCAG336689AG336690
length699702
length of high quality
(start - end)
419 (122 - 540)344 (76 - 419)
definitionCHROMAT_FILE: MSMg01no128_g15.b1 PHD_FILE: MSMg01no128_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:29 2005CHROMAT_FILE: MSMg01no128_g15.g1 PHD_FILE: MSMg01no128_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGGACCGCGGAA
TTCAACTTTCTCCCCTTAAATACTTTGATTTTGGTAGGCAAAAAAAAAAA
AAAAAAACCACCACCATCTAGAATAAACGGCAAGAAGAGAGAGTCCATTT
AAAGGCCACACAGAGTGGAATAGTTTCCACTTCAGATATCAGTAATTTAG
ACAAAGGACATAGCAGTTAATCCTTATTCCCTCATAAGGGAACAGATAAA
ATGAGTACGACCCCAGTCTCCATTCAAGCTGGTACCATGCTCTGATAATA
TTAATAAAATGCGCAGTCTCTGGTTTCTATGCAGGGTGGATGTCAGTTAA
ATATCCATCCGCCCTCCCTTCCAGAAAGCTAATGCAATATTTATTATAGC
TTACAGAAGTATTAACCCCATGATGTTTCCATATAAAGCTCCTTTCTTAT
TACAGTCTTGTGGATGGAATTTCCATGGCTCCCACTTTGAGGCTCAGGGG
ATCCTCTTCCCTTGGTCTCCTCAGGAGCTGGACTAAAGGCATGTACCATT
TCACCTGGTTAGGGGTGGTTTCCTCACTTCAGCCACAGCTTTTAGATCTA
TCCAGAGTGCTCAGGAACGGATAGAGACCCCTGGCCAGTGACACCCTTCC
CTCTACAGCTGAAGCCGGCATTTTGTGCCAGGATACTGTGAGTCCCTCT
NTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATGCACAGGCTGTACTGAGATGTA
AGAAGTGGAGAATAATCCAAGTACGTTTATCGTCATGCTAGAAGATGCTC
TGCAGGAGGAGGGAGGGACTCATTAATATCACCCAGCTACAAACCTCATG
ATGCACAATAGTGACCTAACTGTAAGCGACTGCAGCAATGGTGGAAAAGA
TCTTACGGGAGTAGCCAACCACTTTGTTTTTAATTGCATTTGAGGTCCGC
TCCAAGAGATACTTGACACTGCTAAAGTGTCTAAGAACCTGAGACTAGAC
AGGTGATGGGCCTCGAGGAACTCCCACCACTATCGCTCTGCTAAAGGAAA
TAGCAATGAAATGATTCCTAACGACATTCTGCATGTCTGTATCCCATGCG
TATGCCTTGATCAGCTCTCATTGGAGAAGTTTCTGTTTGTGCGACATAGT
TAACTGACTGGAAAACATACAGCCTGATTGTGACAGTGAGAGAGAAACTT
TGGAGCACTCAACCCTAAATGGGATGACTTTATCAGACTCCTCTCCTCAA
GGCTCATGGATCTATGTGGCACAGGAGGTAGAGAGACTGTGATAGGTGAT
ATGACAATCCTGTTACTGTACACAGAGTTGAGGGCATTTGACATCTGTGA
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_g15.b1 MSMg01no128_g15.b1 CHROMAT_FILE:
MSMg01no128_g15.b1 PHD_FILE: MSMg01no128_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:29 2005
         (419 letters)



>mm_chr3_36564831_36565649
          Length = 819

 Score =  787 bits (407), Expect = 0.0
 Identities = 416/419 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataaacggcaagaagagagagtccatttaaaggccacacagagtggaatagtttccact 60
           ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 aataaacagcaagaagagagagtccatttaaaggccacacagactggaatagtttccact 260

                                                                       
Query: 61  tcagatatcagtaatttagacaaaggacatagcagttaatccttattccctcataaggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagatatcagtaatttagacaaaggacatagcagttaatccttattccctcataaggga 320

                                                                       
Query: 121 acagataaaatgagtacgaccccagtctccattcaagctggtaccatgctctgataatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagataaaatgagtacgaccccagtctccattcaagctggtaccatgctctgataatat 380

                                                                       
Query: 181 taataaaatgcgcagtctctggtttctatgcagggtggatgtcagttaaatatccatccg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taataaaatgcgcagtctctggtttctatgcagggtggatgtcagttaaatatccatccg 440

                                                                       
Query: 241 ccctcccttccagaaagctaatgcaatatttattatagcttacagaagtattaaccccat 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 ccctcccttccagaaagctaatgcaatatttattatagcttacagaagtattaagcccat 500

                                                                       
Query: 301 gatgtttccatataaagctcctttcttattacagtcttgtggatggaatttccatggctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatgtttccatataaagctcctttcttattacagtcttgtggatggaatttccatggctc 560

                                                                      
Query: 361 ccactttgaggctcaggggatcctcttcccttggtctcctcaggagctggactaaaggc 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccactttgaggctcaggggatcctcttcccttggtctcctcaggagctggactaaaggc 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)