BAC Information

Click to search

BAC

Clone NameMSMg01-128P01
Chromosome3 (Build37)
Map Location 63,387,699 - 63,387,984
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr149, LOC676984, LOC666967, Mme
Downstream genePlch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, 4930518C23Rik, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128P01.T7 (MSMg01no128_p01.b1)MSMg01-128P01.TJ (MSMg01no128_p01.g1)
ACCAG337082AG337083
length710706
length of high quality
(start - end)
569 (46 - 614)286 (122 - 407)
definitionCHROMAT_FILE: MSMg01no128_p01.b1 PHD_FILE: MSMg01no128_p01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:12 2005CHROMAT_FILE: MSMg01no128_p01.g1 PHD_FILE: MSMg01no128_p01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAGCTGACCATACAGAATGTCTGAGAAGCACCTAAAGAAATGTT
CAACATACTTAGTCATCAGGGAAATGCAAATCAAAATAACCCTGAGATTC
TACCTCACACCAGTAAGAATAGTAAGAAAAAAACTCAGGTGACAGCAGAT
GCTGACAAGGATGTGAAGAAAGAGGAACACTCCTCCATGGCTGGGGGGGA
TTGCAAGCTAGTACAACCACTCTGGAAATCAGTCTGGAGGTTTCTCAGAA
AACTGGACAAAGTACTACCTGAGAACCCAGCTATACCACTCCTGGGCATA
TACCCGGAAGATGCTCCAACATGTAATAAGGATACATGCTCCACTATGTT
CCTAGCAGCCATATTTATAATAGCCAGAAGATGGAAACAACCCAGATATC
CCTCAACAGACGAATGGATACAGGAAATATGGTACATTTACACAATGGAG
TACTACTCAGCTATTAAAAACAATGAGTTCATGGAATTCACAGGCAAACA
GAACATGAAAAAAATCATCCTAAGTGAGGTAACTCTCAGTCACAAAAGTA
CACACATGGTATGTATTCATTGGTAAGTGGATATTAGCCCAGAAGCTCAG
AATATCTAAGATACAATTCCCAGACCATATGATGCTCAAGAAGAAGGATG
ATCAAAGTGT
TAAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTCATTTTAAAATCTGACATATTTGGTGAA
GATCAAAAACAAAATACACCACAAAAAAAAACCTCATGTGACTAAACTTT
CCAGTCAACATTGTTGTTTAGAGACCAGGGTTCCCGTAAGTTATGTGGCC
TACAGTTAAGCTAAGGAAAGGGAGAGGTCACGTGTCTCTTCCTCTATCCT
TTTCACAGTTCCACCAGATACAAGCTGGGCACAAGGAGGGTGCTGGAATT
TCCATAGCTTGATGTTGATGAAGAATTTCAATGACACTGACTTAGAGGTC
ATTTTTCCATCTTGTGTGTTCCTACCCTTGTCACTGCCTTTTCAAGAGGG
TGGGGAACACATTTAGAAATAGCTCCATGGCTTTCACGCTTGAAAACATT
GAAACAGGCACACTGTTGAGGACCACTCACAGGGCTCTACCCTGATGCTC
TCTCATGCTTATCCAGAATCTCTTTGGTAGCCACTTTGAAATGTGCTGAA
TGCTCCTGCCTCACCCTGGAGCCCTCCCTTCACCTTGCACTATGGCCATG
ACCCTATAGTTGTACAGCCCGCCAAGTTGCCCCTATTGCTCAGAGCTCAT
TTTCAGAGATGTAACAAGGCTGGTACATTGCCGAGGAAGAGAGACCTGAA
TTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_p01.g1 MSMg01no128_p01.g1 CHROMAT_FILE:
MSMg01no128_p01.g1 PHD_FILE: MSMg01no128_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:12 2005
         (286 letters)



>mm_chr3_63387499_63388184
          Length = 686

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaaaaaaacctcatgtgactaaactttccagtcaacattgttgtttagagaccagggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 caaaaaaaaacctcatgtgactaaactttccagtcaacattgttgtttagagaccagggt 427

                                                                       
Query: 61  tcccgtaagttatgtggcctacagttaagctaaggaaagggagaggtcacgtgtctcttc 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tcccgtaagttatgtggtctacagttaagctaaggaaagggagaggtcacgtgtctcttc 367

                                                                       
Query: 121 ctctatccttttcacagttccaccagatacaagctgggcacaaggagggtgctggaattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ctctatccttttcacagttccaccagatacaagctgggcacaaggagggtgctggaattt 307

                                                                       
Query: 181 ccatagcttgatgttgatgaagaatttcaatgacactgacttagaggtcatttttccatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccatagcttgatgttgatgaagaatttcaatgacactgacttagaggtcatttttccatc 247

                                                         
Query: 241 ttgtgtgttcctacccttgtcactgccttttcaagagggtggggaa 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ttgtgtgttcctacccttgtcactgccttttcaagagggtggggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)