BAC Information

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BAC

Clone NameMSMg01-129A12
Chromosome3 (Build37)
Map Location 28,502,740 - 28,502,986
singlet/doubletsinglet
Overlap geneTnik
Upstream geneFndc3b, E030011K20Rik, Pld1
Downstream geneSlc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527, 6130401L20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129A12.T7 (MSMg01no129_a12.b1)MSMg01-129A12.TJ (MSMg01no129_a12.g1)
ACCAG337146AG337147
length762712
length of high quality
(start - end)
---247 (71 - 317)
definitionCHROMAT_FILE: MSMg01no129_a12.b1 PHD_FILE: MSMg01no129_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:19 2005CHROMAT_FILE: MSMg01no129_a12.g1 PHD_FILE: MSMg01no129_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTTTTGGCTCCTTGAAAAAACAGTCTTCGCTTGGTGACTAGG
AGACAGGTAGCATTTCCCTCTCATGCCTCTGCCATGTCTAAAATGCATCT
TGCAGCACTCCTGAATCCAACTTTTACAACAGTCTAGGCCTGATGTTAGA
TTAACCATGTTAGTAAGTCTTACTAATAGATACTATTAGGTTTACTTGCA
TTTTACTTTTGCTTATTTATTGGCTACAAACATATGACTATTCTTTCTAC
CATCGATGTACGTTGGCATAGTCTTCTTTTACTCCACACTCACATAATAT
GGGCCAGGTCTTTTTTTTTTTTTGCCCCCCCCCCCCCCCAGGTACACTTA
ACATGCATTATCCTTCGCCGTATTTTTCAAAATAAAAAAAAAAAAAAGCC
CGCTGGGGGGGGGGGCCCCCCCTTTTTTTTATAATGTTTTGTGCCCTTAT
GCCCTTCCCTCTCGTTTCTCTCCCCCGTTCATACGTTTTTGTTCTCTCTC
GCCCCCCTTTTTTCTCCGCTTTCTATTATCCCCTCATTTGCCTCGCTTTT
CCATCGTTCTGTTCCCCACTGGCCGCCTTTATATTCCCTGTTTTTCTACT
TACCCCCCTTCCTCGTCCTCCTCCCCTTTTTCCCCTCCCTCTTTGCGCCC
TATCCCCCTTCCCTCCTCTACCTATCGTGCTCCGCCCCGCCCCCTTTTTT
CACCCCCCGTTT
ATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAAGAGCCCAAATGTGTCATTTCTGTTTCA
TAGCAAGATCGTTTTCTCCCCTTTCTCTTCTTCTCTTTTCTTTTCTCCTT
CTTATGGAAGTATTTCCAGCAAGTATGCAGGGCCCTTGAGCTCTTGACCT
TACAAGACCCATTAGCTTGTGCTATGTCAGGTAACTGGGCATTCTTGGCC
TGCTAAGAGCTTGTCTTGCATCCCTTGAGCTAATATCCTGCTGATTAGTC
ACAAAGCCATAGGATCATTCTGGGAGATGGTGTGCCCGCCAGATAATCAA
AGGTTTCTTTTTTATGCCCCCCCACCCCTTAGGGGGAAAATAGAAACTTG
CTTTGGGTTGACTCATAATACAAAAAAAACAATACCCACACAAGGACTGA
CTGGTGAGTGTTAAGTGTCACACATGATCTCTACTCTTCTTTGCAGGCTG
CTGATAGGCTCGTGGCCTTCCTGCACGCTGCTTACCGACCTGGCTGTCTT
ACGCATACTTCCTGTATCATTCCTCTTTTTCTCTTTAGCGCCCTTTCTTT
TCATTTGTCTCTCCCTGCCACCATAATACACTGCTCCTCCCCCTGCTTTC
CATCCCTATCATGAATTCATACCTTAATTCCTTTCCATTCTCCCCCTGCT
CCTTCCCGCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_a12.g1 MSMg01no129_a12.g1 CHROMAT_FILE:
MSMg01no129_a12.g1 PHD_FILE: MSMg01no129_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:19 2005
         (247 letters)



>mm_chr3_28502464_28503110
          Length = 647

 Score =  470 bits (243), Expect = e-137
 Identities = 246/247 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagagcccaaatgtgtcatttctgtttcatagcaagatcgttttctcccctttctcttc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 523 aaagagcccaaatgtgtcatttctgtttcatagcaagatcgttttctctcctttctcttc 464

                                                                       
Query: 61  ttctcttttcttttctccttcttatggaagtatttccagcaagtatgcagggcccttgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ttctcttttcttttctccttcttatggaagtatttccagcaagtatgcagggcccttgag 404

                                                                       
Query: 121 ctcttgaccttacaagacccattagcttgtgctatgtcaggtaactgggcattcttggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ctcttgaccttacaagacccattagcttgtgctatgtcaggtaactgggcattcttggcc 344

                                                                       
Query: 181 tgctaagagcttgtcttgcatcccttgagctaatatcctgctgattagtcacaaagccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tgctaagagcttgtcttgcatcccttgagctaatatcctgctgattagtcacaaagccat 284

                  
Query: 241 aggatca 247
           |||||||
Sbjct: 283 aggatca 277


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)