Query= MSMg01no129_d06.b1 MSMg01no129_d06.b1 CHROMAT_FILE:
MSMg01no129_d06.b1 PHD_FILE: MSMg01no129_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:32 2005
(379 letters)
>mm_chr3_51629076_51629855
Length = 780
Score = 694 bits (359), Expect = 0.0
Identities = 374/379 (98%), Gaps = 1/379 (0%)
Strand = Plus / Minus
Query: 1 ccctgacggagaca-cacatggcagcacactcggacggaatgctatgtaaacagccctga 59
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 579 ccctgacggagacagcacatggcagcacactcgggcggaatgctatgtaaacagccctga 520
Query: 60 agggtgactcagagttcctgagccttcatttgggatataaccatttttataaggctctta 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 agggtgactcagagttcctgagccttcatttgggatataaccatttttataaggctctta 460
Query: 120 gatgaagaagcctataattatttttctcattatgagtttattttgcattcctatggcctc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gatgaagaagcctataattatttttctcattatgagtttattttgcattcctatggcctc 400
Query: 180 ataaaaatttgtgctgccagatgaatattaaaaccagtaatttcttctttactaacctga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ataaaaatttgtgctgccagatgaatattaaaaccagtaatttcttctttactaacctga 340
Query: 240 gctagtctccctgaatcatagcagactttagaagtgtggaatgtgtgcttatacaccttt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gctagtctccctgaatcatagcagactttagaagtgtggaatgtgtgcttatacaccttt 280
Query: 300 ataaagtggctacaaaacacaaggtttggtcactatgaaacatcatattttgaccatttt 359
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 279 ataaagtggctacaaaacacaaggtttgggcactatgaaacatcatattttgattatttt 220
Query: 360 cccttcttggttgaatctc 378
|||||||||||||||||||
Sbjct: 219 cccttcttggttgaatctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 780
Length adjustment: 9
Effective length of query: 370
Effective length of database: 771
Effective search space: 285270
Effective search space used: 285270
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no129_d06.g1 MSMg01no129_d06.g1 CHROMAT_FILE:
MSMg01no129_d06.g1 PHD_FILE: MSMg01no129_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:32 2005
(185 letters)
>mm_chr3_51505462_51506046
Length = 585
Score = 348 bits (180), Expect = e-100
Identities = 183/184 (99%)
Strand = Plus / Plus
Query: 1 cctggtggctcgaggccctctttgcacaaaatgagttctctcaccatggcgctgcatctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 cctggtggctcgaggccctctttgcacaaaatgagttctctcaccatggcggtgcatctt 260
Query: 61 aaggggtggaggtctctcccttccccactctctgacaccaaactggtttcttattaccga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggggtggaggtctctcccttccccactctctgacaccaaactggtttcttattaccga 320
Query: 121 cttttctccagccagagggaagagggacttggcagggtggggtgaggggtgcgggtgggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttttctccagccagagggaagagggacttggcagggtggggtgaggggtgcgggtgggg 380
Query: 181 gggg 184
||||
Sbjct: 381 gggg 384
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 585
Length adjustment: 8
Effective length of query: 177
Effective length of database: 577
Effective search space: 102129
Effective search space used: 102129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
