BAC Information

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BAC

Clone NameMSMg01-129K17
Chromosome3 (Build37)
Map Location 146,266,796 - 146,267,385
singlet/doubletsinglet
Overlap geneDnase2b, Uox
Upstream gene2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473
Downstream gene4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7, Ppia-ps3_1528.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129K17.T7 (MSMg01no129_k17.b1)MSMg01-129K17.TJ (MSMg01no129_k17.g1)
ACCAG337619AG337620
length740748
length of high quality
(start - end)
591 (48 - 638)572 (74 - 645)
definitionCHROMAT_FILE: MSMg01no129_k17.b1 PHD_FILE: MSMg01no129_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:10 2005CHROMAT_FILE: MSMg01no129_k17.g1 PHD_FILE: MSMg01no129_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGG
AATTCTTATTTCTTAAGATCTACCTCTCTTTTGTGTATATGAGGGGTTTG
TTTTCTTGCAGTTTTGTGCACCATGCGTGTGCCTGGTGCTTGCAGAGATT
GGAAGAGGTCACCAGATCCTCTGGAATTAGAGTTAAGATAATTGTGAACC
ACCATAAATGTGGGTGCTGGAAACCGAACCTGGGTTTTTTGAAAGAGCAG
AAAGTGCTCATAACTGCTCACTCGTCTCTCCTACCCTGACTAAAAACTGC
TATAAGGAAAACCTAGACGCATGTGGGGAGCACTTCCTGCACACTTCCAT
CTTCTTGACACTTATGAAGAACTTGAAGCTTGTTAGGGTGTCTTAGAACT
CAAAACGATGTCCCCTGCACACCTAAAAATGACCTAACTTTCCTGAAATA
GTCTGCCAGTGAAAAGCCTTGTGTCTTGGACAAAACATTGGCGGTGTACA
GGGCACCACTGAATGCTGGGCCAGATGTGGAAAGGACCTGCTCTAGCTTA
CACGGTCTGGCAAAGACTGTTGTGTGAGCCCAGTCTTAATGCTTGGTGAC
TACAATGCCCTGAGTTCAAAGAGAAGAGCCATGTTTTAGGGAAAGGACTG
GTGGGAACTAACGAAGACGGCATTGCCAGAATAGCGGATGTGTGTCGACT
GGCATATAAATCACAGGAACTTGAGCCAGTTCCTAGTTGT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTTTGAGCCCCTTCTTAG
AATTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAG
CTGAGACGAAAGGATGGACCATCTAGAGACTGCCATACCCAGGGATCCAT
CCCATAATCAGCCTCCAAATGCTGACACCATTGCATACATAGCAAGATTT
TGCTGAAAGGACTCTGACATAGCTGACTCTTGTGAGGCTATGCCGGGGCC
TGGAAAACACAGAAGTGGATGTTCACAGTCAGCTATTGGATGGATCACAG
GGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGGTCT
GCAACCCTATAGGTGGAACAACAATATGAACTACCAGTACCCCCGGAGCT
TTTGTCTCTAGCTGCATATATAGCAGATGATGGCCTAGTCGGCCATCAGT
GGAAAGAGAGGCCCATGGGTCTTGCAAACTTTATATGCCTCAGTACAGGA
GAATGCCAGGGCCAAGAAGTGGGAGTGGGTGGGTAGTGGAGTGCGGGAGA
GGTTTGGCGGACTTTTGGGAAAGCATTGGAAATGTAAACGAAGAATATAC
CTAATAAAAAATAAAGTCACTTTTAAAAGAAGTCATTTTTTGAGCTCAGC
CCTCGTCAGAGAACTTTTCTGACAAGTAGAAGGGAATTAACATAGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_k17.b1 MSMg01no129_k17.b1 CHROMAT_FILE:
MSMg01no129_k17.b1 PHD_FILE: MSMg01no129_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:10 2005
         (591 letters)



>mm_chr3_146266595_146267585
          Length = 991

 Score = 1071 bits (554), Expect = 0.0
 Identities = 581/590 (98%), Gaps = 1/590 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcttatttcttaag-atctacctctcttttgtgtatatgaggggtttgttttcttg 61
           |||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattcttatttcaaaaggatctacctctcttttgtgtatatgaggggtttgttttcttg 261

                                                                       
Query: 62  cagttttgtgcaccatgcgtgtgcctggtgcttgcagagattggaagaggtcaccagatc 121
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cagttttgtgcaccatgcatgtgcctggtgcttgcagagattggaagaggtcaccagatc 321

                                                                       
Query: 122 ctctggaattagagttaagataattgtgaaccaccataaatgtgggtgctggaaaccgaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctctggaattagagttaagataattgtgaaccaccataaatgtgggtgctggaaaccgaa 381

                                                                       
Query: 182 cctgggttttttgaaagagcagaaagtgctcataactgctcactcgtctctcctaccctg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cctgggttttttgaaagagcagaaagtgctcataactgctcactcgtctctcctaccctg 441

                                                                       
Query: 242 actaaaaactgctataaggaaaacctagacgcatgtggggagcacttcctgcacacttcc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 actaaaaactgctataaggaaaacctagacgcatgtggggagcacttcctgcacacttcc 501

                                                                       
Query: 302 atcttcttgacacttatgaagaacttgaagcttgttagggtgtcttagaactcaaaacga 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 atcttcttgacacttatgaagaacttgaagcttgttagggtgtcttagaactcaaaacga 561

                                                                       
Query: 362 tgtcccctgcacacctaaaaatgacctaactttcctgaaatagtctgccagtgaaaagcc 421
           ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tgtcccctgtagacctaaaaatgacctaactttcctgaaatagtctgccagtgaaaagcc 621

                                                                       
Query: 422 ttgtgtcttggacaaaacattggcggtgtacagggcaccactgaatgctgggccagatgt 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ttgtgtcttggacaaaacattggcggtgtacagggcaccactgaatgctgggccagatgt 681

                                                                       
Query: 482 ggaaaggacctgctctagcttacacggtctggcaaagactgttgtgtgagcccagtctta 541
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 682 ggaaaggacctgctctagcttacacaatctggcaaagactgttgtgtgagcccagtctta 741

                                                             
Query: 542 atgcttggtgactacaatgccctgagttcaaagagaagagccatgtttta 591
           |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 742 atgcttggtgactacagtgccctgagttcaaagagaagagccatgtttta 791


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)