BAC Information

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BAC

Clone NameMSMg01-129M13
Chromosome3 (Build37)
Map Location 44,405,145 - 44,405,757
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039264
Downstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129M13.T7 (MSMg01no129_m13.b1)MSMg01-129M13.TJ (MSMg01no129_m13.g1)
ACCAG337703AG337704
length738739
length of high quality
(start - end)
617 (46 - 662)556 (77 - 632)
definitionCHROMAT_FILE: MSMg01no129_m13.b1 PHD_FILE: MSMg01no129_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:19 2005CHROMAT_FILE: MSMg01no129_m13.g1 PHD_FILE: MSMg01no129_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTTGCTCTCCCATAAAAGGGAAAAGAGATATAAAAGCTGGGATT
CATGGCTATGTTATAAGAAACATGGGCCATATTAATGTGTTTTTACATTT
CAAGAATTTACTGAAAAATAGTAAATCCTTAAGCAATGTTGATTTAGTTA
GCTACAATTTTCCAATGAGTCGCATTCTCCATGACCATTGTTAATTATAA
AACACAGATTATTAAGATTTTAATTTCCTAGTCTGAGATCAAACATTACA
TATTATGTGATGATATCAATGGAGATCTATATCCATCATCAATCAATGAT
GGATCTACCTAATACCTTTATATTACAAAATGGCAATAGATCAAACAAAG
TAGAGTAGCAGAGACTCTCATCTAGAGACAGAGATGGGACTGCCAACAGA
CACAAAGAAAATTGTTATATGTAACTACATAAGTATTAACAACTAAATTG
AAGAGAGCTGTTGAGAGTCATAGATCCAGGCTGCAAGGTAACCAGTAAAG
ACAGACCTTGACTTTAGTCACCTCTAACTTCTTAAGGCTATAGAGGTACA
GAGATGTAGAGTTCAGGCATAAGATTCCAAGACTGGAGAGGCAAAAGAGA
CGGACAGGTACACTGGAGTAATTGTTAGACTAACAGAATATCTGAGAAGA
CCTGGTTAGTGCTGGCATTGTGCATAGGTCTTATCTAN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAGTGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGCGGCACATCTACACAATGGAGTACTACACAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAACATGTACTCATTGATAA
GTGGATATTAGCCCATAACCTAGGATACCCAAGATATAAGATACAATTTC
CTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_m13.b1 MSMg01no129_m13.b1 CHROMAT_FILE:
MSMg01no129_m13.b1 PHD_FILE: MSMg01no129_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:19 2005
         (617 letters)



>mm_chr3_44404941_44405957
          Length = 1017

 Score = 1131 bits (585), Expect = 0.0
 Identities = 606/613 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacttgctctcccataaaagggaaaagagatataaaagctgggattcatggctat 64
           |||||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacttgcactataataaaagggaaaagagatataaaagctgggattcatggctat 264

                                                                       
Query: 65  gttataagaaacatgggccatattaatgtgtttttacatttcaagaatttactgaaaaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttataagaaacatgggccatattaatgtgtttttacatttcaagaatttactgaaaaat 324

                                                                       
Query: 125 agtaaatccttaagcaatgttgatttagttagctacaattttccaatgagtcgcattctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtaaatccttaagcaatgttgatttagttagctacaattttccaatgagtcgcattctc 384

                                                                       
Query: 185 catgaccattgttaattataaaacacagattattaagattttaatttcctagtctgagat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catgaccattgttaattataaaacacagattattaagattttaatttcctagtctgagat 444

                                                                       
Query: 245 caaacattacatattatgtgatgatatcaatggagatctatatccatcatcaatcaatga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caaacattacatattatgtgatgatatcaatggagatctatatccatcatcaatcaatga 504

                                                                       
Query: 305 tggatctacctaatacctttatattacaaaatggcaatagatcaaacaaagtagagtagc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 505 tggatctacctaatacctttatattacaaaatggcaatagatcaaacaaagtagaatagc 564

                                                                       
Query: 365 agagactctcatctagagacagagatgggactgccaacagacacaaagaaaattgttata 424
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agagagtctcatctagagacagagatgggactgccaacagacacaaagaaaattgttata 624

                                                                       
Query: 425 tgtaactacataagtattaacaactaaattgaagagagctgttgagagtcatagatccag 484
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 625 tgtaactacataagtattaacaactaaattgaagagagctgctgagagtcatagatccag 684

                                                                       
Query: 485 gctgcaaggtaaccagtaaagacagaccttgactttagtcacctctaacttcttaaggct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gctgcaaggtaaccagtaaagacagaccttgactttagtcacctctaacttcttaaggct 744

                                                                       
Query: 545 atagaggtacagagatgtagagttcaggcataagattccaagactggagaggcaaaagag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atagaggtacagagatgtagagttcaggcataagattccaagactggagaggcaaaagag 804

                        
Query: 605 acggacaggtaca 617
           |||||||||||||
Sbjct: 805 acggacaggtaca 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)