BAC Information

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BAC

Clone NameMSMg01-130B05
Chromosome3 (Build37)
Map Location 151,662,584 - 151,662,865
singlet/doubletsinglet
Overlap genenone
Upstream geneEltd1, Ifi44, H28, Ptgfr, LOC100040741, LOC100040597
Downstream geneLOC676548, Gipc2, Dnajb4, Fubp1, Nexn, C030011O14Rik, Usp33, Zzz3, Ak5, LOC100040705, Pigk, Rpl29-ps1, St6galnac5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130B05.T7 (MSMg01no130_b05.b1)MSMg01-130B05.TJ (MSMg01no130_b05.g1)
ACCAG337920AG337921
length1,188726
length of high quality
(start - end)
444 (472 - 915)283 (76 - 358)
definitionCHROMAT_FILE: MSMg01no130_b05.b1 PHD_FILE: MSMg01no130_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:43 2005CHROMAT_FILE: MSMg01no130_b05.g1 PHD_FILE: MSMg01no130_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCTTTTNNNNNNNGGCAGTGCGCGCTAXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCTGAGACTGAAGCATCATTAAAGCTTTTATTTAGGTG
CACAATCGCTGTGCTCTGCCTAAAGGCAGACATGATTAGGCTTCTCCCGA
GGTGACATAATTATGGTGTAACTTAAGTTAGACACTTTGTCCGAAGTGCT
TAGTACCTGGCACTTACATAGTATCCTGAAAAACAGTAAATGTGCTCACG
TGAGTTCCTGCAAATATATGCTTCAAATGTAGATGTGTACTAAACTGCTC
CATCCTCACCAAGACTGAAGGAAAAGCACTGATGAAAATACAGATAATCT
TGTGAGAAGTGAAACGAGGATGGGGGGGGACTTTCTATATACAGTAATTA
AGAGAGCTTCCTGCGCCGGGCAGTGGTGGCACATACCTTTAATCCTAGAA
CTTGGGATGTTTACGCCCACCAATTTCTGAGTTCGAGGACAGCCTGAACT
ACAGTTGCAGGACAGTTGTCAGAGATAATTGTCCTCTGTCTCCTAACTTA
GCCCTAGACCTGGAAGCTTCTAGCCTCCACACAATCCAATCTAGGCCTAG
AATGTTTTCTGCCTCTGAGACTTATTATTGAATAAGCTCACCCTTTCTTG
AGATTTCTAAACTTGCTGGCTGATCAACTCAGCTGTTCTGGTTCAAAACT
CTTTTCCACACTGACTGATACAGTCTGACTTCTCTTGGTTTCTCCTAAAT
TGCTCTGCTTGTCCTCAAAGAAGCCCTAGCAATCTGCTCTAATCTGCCTT
TCTCATTCTCTGGCTTATTCTCTCTTCACCCATGTCTAATTTGTTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCCCCTCTCCCTCCCCCTTCCCCTCNTTTTCCCCTTTTTCTTTT
CTTCTTCCCTTTCTTNTTCTTCTTTNCCCTNTTTCTTNNTTTNTCTCTTT
TTTCTCCTTTTTCTTTCCTTCCTTCTTCCTTCTCCCTCTTCCTTTTCCTT
CCTTTCCTTTCTTCCTTTTTCCTCTCTTTCTCTCCTTTNCTCTCCCTCCT
TTCTCTCTTTTTNTCTTTTTTTTTTTTCTCCCTCCCTCTCTTTTCTCTCT
TCTTCTTTCTTTCTCTTTTTTTCTTCTTCCTCTCTTTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTGTCTTTATAGATTTCCAAATGG
GCAGGAAGGTTCCATACTATGCCCTCTAGCTTTCATGTTAGGAGACACAG
AGGCAGGAAAACAGAAGATAAGTATAATTCAAGGTTGTTTTGGGCTCTAG
CTGTGTGTGTATGTGTGTGTGCACATGCCAGAGCTGCAAATAGAAGAGGG
AGGGCAACAAGGGTGTAGCATGTATTGCTCTATAGTTCTCTTTCTAGGGA
GGGGCTAGAGTAGATGGGAGATGGCCTGAAGTTTTGAGTTTTGGGCAGAG
ATAGCGGGGAGAGAGAGAGAGACACACAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGCGTGGGGCGTGGG
TGCNCTGCGCCTTTGCCCGAGACTGAGAAAGGCAGATTAGAGCAGATTGC
TAGGGCTTCTTTGAGGACAAGCAGAGCTACTTAGGAGAAACCACTAAAAC
TCAAACTGTATCAGCCCGTGTGCTAAACATTTTTGAACCACAAGCGCTTG
AGTTGATCAGCCAGCTAGTTTAGAATCCTCAAGAATGCCCGAGTCTTATC
TATAATAATTTCTCAAATCCACAAACCATTCTAGGCCTTAAATTTGAATT
GGGTGGAGGCTATAACTCTTTCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_b05.g1 MSMg01no130_b05.g1 CHROMAT_FILE:
MSMg01no130_b05.g1 PHD_FILE: MSMg01no130_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:43 2005
         (283 letters)



>mm_chr3_151662384_151663066
          Length = 683

 Score =  493 bits (255), Expect = e-144
 Identities = 276/283 (97%), Gaps = 2/283 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgtctttatagatttccaaatgggcaggaaggttccatactatgccctctagctttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||
Sbjct: 482 cttgtctttatagatttccaaatgggcaggaaggttccatactatgtggtctagctttca 423

                                                                       
Query: 61  tgttaggagacacagaggcaggaaaacagaagataagtataattcaaggttgttttgggc 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tgttaggagacacagaagcaggaaaacagaagataagtataattcaaggttgttttgggc 363

                                                                       
Query: 121 tctagctgtgtgtgtatgtgtgtgtgcacatgccagagctgcaaatagaagagggagggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tctagctgtgtgtgtatgtgtgtgtgcacatgccagagctgcaaatagaagagggagggc 303

                                                                       
Query: 181 aacaagggtgtagcatgtattgctctatagttctctttctagggaggggctagagtagat 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 302 aacaagggtgtagcatgtattgctctacagttctctttctagggaggggctagagtagat 243

                                                      
Query: 241 gggagatg-gcctgaagttttgagttttgggcagagatagcgg 282
           |||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 242 gggagatgag-ctgaagttttgagttttgggcagagatagcgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)