Query= MSMg01no130_d21.b1 MSMg01no130_d21.b1 CHROMAT_FILE:
MSMg01no130_d21.b1 PHD_FILE: MSMg01no130_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:56 2005
(450 letters)
>mm_chr3_10989480_10990331
Length = 852
Score = 847 bits (438), Expect = 0.0
Identities = 448/452 (99%), Gaps = 2/452 (0%)
Strand = Plus / Minus
Query: 1 gcacgtatatagtcatttttcctacacttaagccatgtatgaataagtacataggtctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 gcacgtatatagtcatttttcctacacttaagccatgtatgaataagtacataggtctaa 593
Query: 61 aattaatgaagcatatcacaggataatattaaaattctacaataccattcaaagttagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 aattaatgaagcatatcacaggataatattaaaattctacaataccattcaaagttagaa 533
Query: 121 ggtgaaatggaaaattaaaggtacataattttggaagattacagggtctgagattcccct 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 532 ggtgaaatggaaaattaaaggtacaaaattttggaagattacagggtctgagattcccct 473
Query: 181 aagtcaaggaatatttgaaagaagttggacaaacttatatctagtagaagcaaactacac 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 472 aagtcaaggaatatttgaaagaatttggacaaacttatatctagtagaagcaaactacac 413
Query: 241 atatcaaacaagtgtgacaataaatgatacatccatgtaacaaaataccctgcaactctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 atatcaaacaagtgtgacaataaatgatacatccatgtaacaaaataccctgcaactctt 353
Query: 301 ataaagagctcttgttaattgccaatgtggtttatatatcagaagagacaggagc--aaa 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 352 ataaagagctcttgttaattgccaatgtggtttatatatcagaagagacaggagcaaaaa 293
Query: 359 aaaaaatggtttgaggacaaataacttcatagaaaaaaataagttttgatgctaattata 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 aaaaaatggtttgaggacaaataacttcatagaaaaaaataagttttgatgctaattata 233
Query: 419 tacagtgatcagttccaagtggtttgaaaggc 450
||||||||||||||||||||||||||||||||
Sbjct: 232 tacagtgatcagttccaagtggtttgaaaggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 852
Length adjustment: 10
Effective length of query: 440
Effective length of database: 842
Effective search space: 370480
Effective search space used: 370480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no130_d21.g1 MSMg01no130_d21.g1 CHROMAT_FILE:
MSMg01no130_d21.g1 PHD_FILE: MSMg01no130_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:57 2005
(596 letters)
>mm_chr3_10888585_10889580
Length = 996
Score = 1114 bits (576), Expect = 0.0
Identities = 591/596 (99%)
Strand = Plus / Plus
Query: 1 ttcatatttctcttacttcaagacttcaaatttttttatcaatttaaacctttgtagtta 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ttcatatttctcttacttcaagacttcaaatttttttatcaatttaaatttttgtagtta 260
Query: 61 ataatatgtaaacttaatcaataagcaaaactgatatgttgattgtaaataatgaatggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataatatgtaaacttaatcaataagcaaaactgatatgttgattgtaaataatgaatggg 320
Query: 121 tttaattgcttttgtataattatttaagcatatagttatgtagttgccctccacactttt 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 tttaattgcttttgtataattatttaagcatatagttatgtagttgccttccacactttt 380
Query: 181 ggaagaatcaattacagaactcttttcttactttgattttctgtgtttcctattctagct 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 ggaagaatcaattacagaactcttttcttactttgattttctgtttttcctattctagct 440
Query: 241 tctctatttagataaaattctagtatcttctcttcaaatgctttccaaattgtttagaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctctatttagataaaattctagtatcttctcttcaaatgctttccaaattgtttagaca 500
Query: 301 tccccaaaccagagtataacttactagtaacatgagttattttctttctttctttctttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccccaaaccagagtataacttactagtaacatgagttattttctttctttctttctttt 560
Query: 361 tttatttttgttttttgagacagggtttctttgtgtagccctggctgtcctggaagtcac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttatttttgttttttgagacagggtttctttgtgtagccctggctgtcctggaagtcac 620
Query: 421 tctgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcctcccaagtgcta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcctcccaagtgcta 680
Query: 481 gaattaaacgcatgtgtcaccacgctcggcatatgaattattttcttagagattcataag 540
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 681 gaattaaacgcatgtgtcaccacgctcggcatatgatttattttcttagagattcataag 740
Query: 541 cattagacttcaactattcagtattgcatgtattagtaatttctagctctaatcag 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cattagacttcaactattcagtattgcatgtattagtaatttctagctctaatcag 796
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space: 577796
Effective search space used: 577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
