BAC Information

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BAC

Clone NameMSMg01-130E22
Chromosome3 (Build37)
Map Location 110,394,278 - 110,394,511
singlet/doubletsinglet
Overlap genenone
Upstream geneVav3, Ntng1, LOC100043181, LOC100043183, Prmt6
Downstream geneLOC100043190, LOC668712
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130E22.T7 (MSMg01no130_e22.b1)MSMg01-130E22.TJ (MSMg01no130_e22.g1)
ACCAG338095AG338096
length7181,166
length of high quality
(start - end)
234 (130 - 363)716 (138 - 853)
definitionCHROMAT_FILE: MSMg01no130_e22.b1 PHD_FILE: MSMg01no130_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:02 2005CHROMAT_FILE: MSMg01no130_e22.g1 PHD_FILE: MSMg01no130_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCAGTGAGATTTCCACCCCTTGCTATATCCCTGGCTATAAACTATTT
TGTAGCTTTGCTCTAGCATTTATTCTAGAGATTGTGATTATTTCTGGTAT
AAAGATATTTCTGGAGAATTATTATGAGGTATAACTGTCATGTTTCATGT
TTGAATTATAAAAGGGAAAACAATGATACTATTCTGTTAATCCAAAGAAC
TTCCAGAAAATATGATGTAATGATCCAGGAAATGTTTTGCACTTTTGGAA
GCTGGGAAGATAAATAGAAAAAGACTGATTAACCTTTAGATTCATAGGGC
ACACTACACAGTTGTTTTTATTTCACACCCCCCCCAGGTTATTAAAAACC
AAGATGATAAAGAGGGGAAACCGCCATTGAAAGAACAGAGTAATTCAGGA
TGTTTGAAGTGCAGGGCAATGGATGAGTGGAAGAAGATAGGAGGTAAGAG
GTCCTATTGTGTAGAATAGAGAACAGTGTCATGTGAATGCAGCCTGATCT
GTGATGATCCATGATCACATATCTAAGCTTCTTTTTCATAACTACATTAG
ACCAATTCTTGTCTTAAAATGAATCTCCCTTAGAACAGATTGGTAGGTTA
AAAGAGAAAATAGAGAAGTCAGTGAGGACAGCAATGACAAACCAGGAAGT
GATTCTGTGGTTGTGAAA
NCCGGCTCTTTNNNNAACCATGGATGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAAGCGCCTCAGGGTTAAGG
AGTTGGGAGGNAGTGCCTTAAAACGTACGCTGGGCAACTGAGTTGAGTTT
TGTTTTGTAAGTTGAGGCAGTTGACTTCAGTGAGTCAAGTCAGTGCAGTG
GAGTTGAGTTTAGGCAGTTCAGTGCAGGCCAGCAGAGGCAGTTGAAGGCA
GAGTATAAGAAACCAGAAGATTAGAACTAATTGCTCCAGTTAGTTTTAGA
TCAAGCAGAGCAAAATGTCAGAAGTGGAGAGAAGCCGGTTTGAGTCGGTC
ACCTTGGAGAGAAATTTGAGCCAGAACAGCCAACCAGGATTCAGAAAGTG
CCATATTTGGTAAGCTTATTCAGTAGTAAGCCTCAGAGACAACAATCACT
GTGCATATAAAAGCTACTTTTACATAAGCTGAGTCTAAATCTCATGATTG
AAAAGGTTTCTGTAAAGGAGACCTAATACTACTATGTAGCTTCTTTGTTA
CAGCATCTTGCTACCTTCTAAATATTTATGTGTATTCCCATCTACAACAG
CTAATTGCAGTCTTGGTCAGAAGAACGACTCCTTGAGGTTAATATGGGTA
AATGCAAAGACAATGGCTGCCCAACATGTTGAACATAAAACACAGTTGAG
AGCTCAGCTCTAAACAAGATATACCATTACCTCAAGGTTCAGGGAATGGT
TCAGAAGATTTGGTGAAAAAAGTAAGAGTCAGAAAAGGGGAGACCATGTC
CTAATGGCTATCATCTAACCATGGTGTAGCCAATGCAGTCATGAACTCTC
AGCAGCTGTGCGTAATTGCACTGGGTTCGCACAAGTCATGTTCTTCTAAT
ACTCAGCCATGCGATGGGGACATAAACTCACTTACTGCCATAGTTCAACT
CTATTCTCTCCCCCCCGANATAGAGAGAGAGATAGAGATATAGAGAGAGA
GATAAATAGGGTTTTGGGATGGTTTTTTTTCTTTCTTTTTTTCTCTTTTA
CTTTCTTATCTCTTTTTCTCTTCCTTTTTCCTTTCTCCTTCTCTTTATTC
TTTTCTTTTTCTTCTCTCTTTTCTCTTTTACCTTATTTCTTTTTTTTTTT
TCTTCCCTTTTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_e22.b1 MSMg01no130_e22.b1 CHROMAT_FILE:
MSMg01no130_e22.b1 PHD_FILE: MSMg01no130_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:02 2005
         (234 letters)



>mm_chr3_110394078_110394711
          Length = 634

 Score =  429 bits (222), Expect = e-125
 Identities = 231/234 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gattgtgattatttctggtataaagatatttctggagaattattatgaggtataactgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 gattgtgattatttctggtataaagatatttctggagaattattatgaggtgtaactgtc 260

                                                                       
Query: 61  atgtttcatgtttgaattataaaagggaaaacaatgatactattctgttaatccaaagaa 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 atgtttcatgtttgaattataaaagggaaaacaatgatactactctgttaatccaaagaa 320

                                                                       
Query: 121 cttccagaaaatatgatgtaatgatccaggaaatgttttgcacttttggaagctgggaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttccagaaaatatgatgtaatgatccaggaaatgttttgcacttttggaagctgggaag 380

                                                                 
Query: 181 ataaatagaaaaagactgattaacctttagattcatagggcacactacacagtt 234
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 ataaatagaaaaagactgagtaacctttagattcatagggcacactacacagtt 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)