BAC Information

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BAC

Clone NameMSMg01-130J04
Chromosome3 (Build37)
Map Location 86,516,375 - 86,516,492
singlet/doubletsinglet
Overlap geneLrba
Upstream gene9930021J17Rik, Glt28d2, LOC100042265, Gm1019, Sh3d19, Rps3a, LOC634201, Mab21l2, EG667024, LOC100042319
Downstream geneDclk2, EG625055, Cd1d2, Cd1d1, LOC667897, Kirrel1, LOC100042355, Msr2, Cd5l, Fcrl1, Fcrl5, Etv3, EG546801, Arhgef11, EG625281
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130J04.T7 (MSMg01no130_j04.b1)MSMg01-130J04.TJ (MSMg01no130_j04.g1)
ACCAG338293AG338294
length717751
length of high quality
(start - end)
118 (193 - 310)44 (125 - 168)
definitionCHROMAT_FILE: MSMg01no130_j04.b1 PHD_FILE: MSMg01no130_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:25 2005CHROMAT_FILE: MSMg01no130_j04.g1 PHD_FILE: MSMg01no130_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXATAGTCGGAACCCGACGGAANCCN
GGCCGATCCCTGCACCAGAGGAGNGNGAGCGNGNAGGGAAGCTGAACCNC
GGCGNGNGATTTCTCCGCAAAGAGAGCANAGNANCATAGNATACAGAGGT
GNATCTGTGAAGTTTTTTGCTTAAAATTCTGAAGCAGTATCAAGATATAA
AGCTTAGAGCATTACAATCAAACCAACTTCACATTTCAAATGTGCATATT
TAAGTAATCAACCGTTAGGAACCCACAGCCCTTTGTTTGCTGGCACAGAA
AACAAAATTGCCTTTTTTTTTTTAGCNNCAAGAGCATACCGAGAAAACCC
ATTTTTTTTTTTTCCCCCTCCCCCCCCCCTGAATTTTATAGTCTCAAATT
ATAGTGCCGTGCACACACAAAAGAAAAACAGCCTGTTTTACCCTATTATA
AACTCTTGAAATCTTTAATTTTTAACTAGCTTATATGCCAGGCCTCCTTA
CCGCTCCATAACCGGCTACATTCGACCTACACGTTCTTTACTTAAACTAC
TCGCCGCGAGTATTATTCACCGTAATTTGGTTTTTCCCATCATCGCATGC
CTGTGATCCCGCATTGAGTCCTAGATCTTTTCTTGCACACCTGTTAATAT
TCACTATTCTCTTTTTTTTCCCCCCCCCCCCCCTTTTTACCCCCCCTTCC
CCTCGACCCTTCTTTAT
ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCCCGAAAAACGTGCCTTCCCCAGTGTTGGTCCCTGAAG
CTAGTCCCGTATTGCATGTGCCGCCAGCTGTGACTCTGGCTTAGGCCGCA
CTGCCACTGAAAGTTGGAGGCCTGCTCGTAAAGGAGCTGAGCCTTGTGTC
ACTGAGGAGAGTTACCAATGAATGATTAGAGGATGATAAACTTGAGGCGC
ATTTTTTGTCTTGGCTGAAGGTGCAAAGGATGAATAGCTCCACGGCAGTT
GTGATTCATCTCACCAAGGCTTGTTGTGTGCTTTTTCTCCCTTTCTTTCC
TTCTTTTGTTTTTTTGTTCCCCCCGCCCCCCCGGTTGTTTTGGTTTGCCT
TGTCTCTTACGACCCCCCCCCCCATCCAAATATAAATCACCTTATCTCCC
TGTCTTCGTATCCTGCCGCTTTTTTCTTGACTTCCTTCCGCCTTTCCTTA
CTTTCCACCCCTCTATTCCCTTTCTATTAGTTCGCATACTCCCCGCTCGC
CTCCTTTTTTTCTTCTTATTTTCCTCGTTCTATACCACCCTCTCTCCCTT
CCCCTTTTTTTCCCTTTTTTCTCTCTCTTACCTCTTCTCTCTTTTCTCCT
CTCCCTTACCCCTAATATTTTTCCCTCCCTCTTTTCCTCTTCTTCCTTTC
CCCTTTTTACTCTCCTTTTCCTTCCCCCCATTTTTTCTTTCTCCCCCCCT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_j04.b1 MSMg01no130_j04.b1 CHROMAT_FILE:
MSMg01no130_j04.b1 PHD_FILE: MSMg01no130_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:25 2005
         (118 letters)



>mm_chr3_86516175_86516692
          Length = 518

 Score =  197 bits (102), Expect = 1e-55
 Identities = 114/118 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatataaagcttagagcattacaatcaaaccaacttcacatttcaaatgtgcatattta 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||   |
Sbjct: 201 agatataaagcttagagcattaaaatcaaaccaacttcacatttcaaatgtgcataaaga 260

                                                                     
Query: 61  agtaatcaaccgttaggaacccacagccctttgtttgctggcacagaaaacaaaattg 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtaatcaaccgttaggaacccacagccctttgtttgctggcacagaaaacaaaattg 318


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 118
Length of database: 518
Length adjustment: 8
Effective length of query: 110
Effective length of database: 510
Effective search space:    56100
Effective search space used:    56100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)