BAC Information

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BAC

Clone NameMSMg01-130J18
Chromosome3 (Build37)
Map Location 153,202,562 - 153,202,753
singlet/doubletsinglet
Overlap geneSt6galnac3
Upstream geneAk5, LOC100040705, Pigk, Rpl29-ps1, St6galnac5, LOC100040750
Downstream geneEG545578, Asb17, Msh4, Rabggtb, Acadm, Slc44a5, LOC100040980, Lhx8, LOC100040810, LOC100040829
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130J18.T7 (MSMg01no130_j18.b1)MSMg01-130J18.TJ (MSMg01no130_j18.g1)
ACCAG338317AG338318
length722712
length of high quality
(start - end)
39 (122 - 160)193 (126 - 318)
definitionCHROMAT_FILE: MSMg01no130_j18.b1 PHD_FILE: MSMg01no130_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:29 2005CHROMAT_FILE: MSMg01no130_j18.g1 PHD_FILE: MSMg01no130_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAA
CACCGCACAGATGTCGAGGCAGGAACCTGAAGCAACTGCTGACATCCACA
GTCACGAGCAGAGAGCATAAAAACAAGCATGCTAACTGTTCAGCTTGCTT
TCTCTGTACATACACAACTTAAGACCCAAAGCAGGTGAAGTATGCGACCC
ACAGGCAAGCTGGGTCTTCACTCACCAATTACTATAGCCAAGATAAAACC
CCTAGACATCCCCAGAGGCCAACTTGCTCTAGACAATCTTTCACTGAGAC
TCTTCTCACGTGATTTTATATTGCGTCTAGCTGATAGTTAAAACTAACCA
TTGTTNNATGTTCCTGGGACANNTTCATACTTATATTTTATTTTTCAATG
CTCAGGATCACCCCCAGAAACTACAACATGCTACTGAAGGAGATGCCTAG
CCTTCTCCACCTCACAGTTTTTCTGAGAACCCAATATATAAGGATGTATT
ATACTAAGAAAATAATTTCACCCATAAGGCCTTTCAAGGATGAATGCCGC
CTCTCATTTGTCCTTGGAGTGAACTGCATTTACACAGTTGAACACTGACC
ACGCATTTTACCTACAGACTGTGAGAAAGCTTTACTGGGAAGGCGGGAAG
AACTTTGTGAAGATGTGATAGAGATAAATTCTCAAATGCCATCCATGACA
TTTCACACATAATATCTTATAT
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCACTCCTGTGGGAATGTGCTGTTGACA
GCTAAGGAGTTTAAGCATGACCCAAAGTCAGCCCTTTTAGTGTTCTCCCG
TGCAGCCCGCACAGGAAGAATGTCTGCTAACACCTCTCCTGACTTCGTGT
GTTTTTGTAAAGCACAGCACAGCACAGCAAATGGCATTGTTTCCTGGACC
ACATTCAGTTATTACAGGCTTTGTGGGAGAATGCTTCTATTCATCCATTT
TATAGATGGAGAAATGTATTTTTATAACTGTTCAAGCTGTGAGCTGCTAA
CAGCTGGTTTATTTTTGCCCCACCCCCACTTTTCTGGCCTGCTGTTGCCC
CAAAGAGAAGCACGTCCCCTTCTGGAACATCTGAAGACTGCTACAGTGTA
CGTATGTAAATAAATACATCTTATAAAAAATTAGAACAGCATCTATACAC
GGATACTGCATTAGTATATGTCCACAGAAGTAGCATGCATACACAGGCCC
AGCGTCTATGCCCGAGCAGCACATGTACGCACGGGAATGGCTTCATGAGT
GCTGCAAAGAGGTTCTAAATGGCAGAGCTTTGCTGAAGATCTGACGAAGC
ATTAAGGTTTGTCTGAAAGCTTGGTCTCTTTAAGAGACCGAGATAGAACG
GACATTGGCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_j18.g1 MSMg01no130_j18.g1 CHROMAT_FILE:
MSMg01no130_j18.g1 PHD_FILE: MSMg01no130_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:29 2005
         (193 letters)



>mm_chr3_153202362_153202955
          Length = 594

 Score =  325 bits (168), Expect = 1e-93
 Identities = 186/192 (96%), Gaps = 1/192 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcagcccttttagtgttctcccgtgcagcccgcacaggaagaatgtctgctaacacct 60
           |||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 392 agtcagcccttttaatgttctcccatgcagccctcacaggaagaatgtctgctaacacct 333

                                                                       
Query: 61  ctcctgacttcgtgtgtttttgtaaagcacagcacagcacagcaaatggcattgtttcct 120
           ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 332 ctcctgacttcatgtgtttttgtaaagcacagcacagcacagcagatggcattgtttcct 273

                                                                       
Query: 121 ggaccacattcagttattacaggctttgtgggagaatgcttctattcatcc-attttata 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 272 ggaccacattcagttattacaggctttgtgggagaatgcttctattcatcccattttata 213

                       
Query: 180 gatggagaaatg 191
           ||||||||||||
Sbjct: 212 gatggagaaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 594
Length adjustment: 8
Effective length of query: 185
Effective length of database: 586
Effective search space:   108410
Effective search space used:   108410
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)