BAC Information

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BAC

Clone NameMSMg01-130L07
Chromosome3 (Build37)
Map Location 60,208,029 - 60,208,656
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823
Downstream geneLOC100040485, Mbnl1, LOC676933, LOC100040501, EG666853, P2ry1, Rap2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130L07.T7 (MSMg01no130_l07.b1)MSMg01-130L07.TJ (MSMg01no130_l07.g1)
ACCAG338391AG338392
length1,252700
length of high quality
(start - end)
341 (477 - 817)628 (73 - 700)
definitionCHROMAT_FILE: MSMg01no130_l07.b1 PHD_FILE: MSMg01no130_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:38 2005CHROMAT_FILE: MSMg01no130_l07.g1 PHD_FILE: MSMg01no130_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGTATAGTNNNNNGGCAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCACCTGAGGAATACCCATAAAAGGAGAAGCACCTGAAAA
AATGCTCAACATCCTTCCCTTTTAAGGGAAATGCAAATCAAAACAACCCT
GAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAACTTCAGGT
GACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTG
TTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGATCAGTCTGGCGGT
TCCTCAGAAAACTGGATATAGTACTACCGGAGGATCCAGCAATACCTCTC
CTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTC
CACTATGTTTATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAGGAAC
CCAGATGCCCTTTTTCACACCCCCGGATACAGAAGATGTGGTACATCTAC
ACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCT
GGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATT
CACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCC
AAAACCTAAGATACCCAAGATATAAGATACAATTTCCTAAACACATGAAA
CTCAAGAAAAATGAAGACTGAAGTGTGAACACTATGCCCCTCCTTAGAAG
TGGGAGCAAAACACCCTTGGAAGGAGTTACAGAGACAAAGTTTGGAGTTG
AGATATAAGGATGGACCATGTAGACACTACCATATCCGGGGATCCATCCC
ATAATCAGCTTCCAAATGCTGACACCTTTGCATACCCTAGCAAGATTATG
CTGAAAGGACCCTGATAAGCTGTCTCTTTGTCAGAATATGCCTGGGCCTA
TCAAACTTAGAATTGGATGCTCCCAGTCCGGCATTTGCAAGGATCACATG
GCCCCCAATGAAGGAGCTAGAAAAAAGTCCAAAAAATCTAAAGGGATCCA
GCAACCCTATTAGTGGAAACACATTTTGGAATAACCCGCTTCCCCGGAGT
TCTTGAATCTTANCTTGCTTATGCATCAAAAAATGGCCCAATCCGTCCTT
CCCTGGAAAAGAAAAGGCCTCTTGGGAAACTCCAAATCTTTTTTATGCCT
CCATAATACGGGGAATCCCCCAGGGCTCATAAATAAGGAAAGGGGTGTGG
TN
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATGTATTATTTTAGAAATAGTACTTTAA
GGGAGACACATAGAACATACCCAAAGTGAGACACCAAAGGGGGGAAAAAG
TGTTTTCTGAAAGTATTCCTATTTGACCTATATTTGGCTCTTCAATTGTT
CATTCATTGTACAGTATAAAAGTCATTCAAATGTCAACATAATTTGTGAG
CTCAGTACAAAATGAAAAATATGACTCTTTATTCAAAAGTATTAAGAAAT
TTAAGAAAACATAGCAGCAAATATGGGAATACTCTGTTAAGTTCAAGGTA
TTTGCAATTGTGTGTGTAAGCCCCTGCAATCAAGAACACAGCTCTGATTT
TCTTGCTCATCCCACAGAGCACAGGTGTGAACAAAAAAATAGTTACAGTT
TTCTAGGAGTTTTCAATATAACATGGAATTGTCATGTTACTAAGGCTTAC
TAACTACATGTAGAATGTTTTACACTTTTTACACATAGCAAACTTATTTT
TTGCTTTCCAGAAAAGACAACAAGAGCAAATATTCCAAGGACAACTCTCT
CCACTGAGCAGTGACCACACATTATCATTTCGATGAAGCTTCTCATTGCT
TCAGAAACTACTTTTCCTACAGACAGAGCTCATGTCCACCTGGACTTTGA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_l07.g1 MSMg01no130_l07.g1 CHROMAT_FILE:
MSMg01no130_l07.g1 PHD_FILE: MSMg01no130_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:38 2005
         (628 letters)



>mm_chr3_60207829_60208856
          Length = 1028

 Score = 1207 bits (624), Expect = 0.0
 Identities = 627/628 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtattattttagaaatagtactttaagggagacacatagaacatacccaaagtgagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtattattttagaaatagtactttaagggagacacatagaacatacccaaagtgagac 260

                                                                       
Query: 61  accaaaggggggaaaaagtgttttctgaaagtattcctatttgacctatatttggctctt 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accaaagggggaaaaaagtgttttctgaaagtattcctatttgacctatatttggctctt 320

                                                                       
Query: 121 caattgttcattcattgtacagtataaaagtcattcaaatgtcaacataatttgtgagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caattgttcattcattgtacagtataaaagtcattcaaatgtcaacataatttgtgagct 380

                                                                       
Query: 181 cagtacaaaatgaaaaatatgactctttattcaaaagtattaagaaatttaagaaaacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtacaaaatgaaaaatatgactctttattcaaaagtattaagaaatttaagaaaacat 440

                                                                       
Query: 241 agcagcaaatatgggaatactctgttaagttcaaggtatttgcaattgtgtgtgtaagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcagcaaatatgggaatactctgttaagttcaaggtatttgcaattgtgtgtgtaagcc 500

                                                                       
Query: 301 cctgcaatcaagaacacagctctgattttcttgctcatcccacagagcacaggtgtgaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctgcaatcaagaacacagctctgattttcttgctcatcccacagagcacaggtgtgaac 560

                                                                       
Query: 361 aaaaaaatagttacagttttctaggagttttcaatataacatggaattgtcatgttacta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaaaaatagttacagttttctaggagttttcaatataacatggaattgtcatgttacta 620

                                                                       
Query: 421 aggcttactaactacatgtagaatgttttacactttttacacatagcaaacttatttttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggcttactaactacatgtagaatgttttacactttttacacatagcaaacttatttttt 680

                                                                       
Query: 481 gctttccagaaaagacaacaagagcaaatattccaaggacaactctctccactgagcagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctttccagaaaagacaacaagagcaaatattccaaggacaactctctccactgagcagt 740

                                                                       
Query: 541 gaccacacattatcatttcgatgaagcttctcattgcttcagaaactacttttcctacag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaccacacattatcatttcgatgaagcttctcattgcttcagaaactacttttcctacag 800

                                       
Query: 601 acagagctcatgtccacctggactttga 628
           ||||||||||||||||||||||||||||
Sbjct: 801 acagagctcatgtccacctggactttga 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)