NCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATCCG
CGGAATTCTCCACTGCTTTGCACTGATACATGCAATGCCATGATGTGCCC
AGAAAACAGTTTTTTTGTGGACAACCAGCTGCTTCAATCTGCTACAATCA
CTGAAACTTGGGAGGAGGAAGTTTAATATGGATGGCCCATGCCCAGCTGA
GGAGCATCCTACACTCTCCTTGATCCATTGCGAAGTCTTGCAATTAACAT
CTACTCAAAAGGGAAACTTTTATAATGAGGCTGGAGTGGTAAACTGATAC
ATGCATGCAATAGCAAGTTGTCAGGAATTGGTTCAATAGTATGCCCATTT
GCTAAAATCACAATTGTCCATTCTACCATAGGACTGCTGTTTGAGGCTCT
TGGCCCTGATACCAGGGCAGATGTGGGATTCACCTTATGAAAAGGACCTT
AAATCCATCAGGGAATGGTTAGTTAACCCCATGGCGTTTGTACCATAATT
GCACCAGTGGGCATATTTTGTCAGGACAGTGACTGTTTTATGTTTCAGGG
TTCACAGCCAGGAAGAGTGGCGATTCCTATACTAGTTTGTTTTAAGGCAC
AGATAGCTAACACATAATCACTCACAGTCTTCCTATTTTTATCAAATGGA
TGGAACTTGAAAATATCATCCTAAGTGAGGTAACTCAGTCACAAAAGAT

NAATCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTGTGAATCCATCTGTGTCTG
AACATTTTTAGAAGGCTTTTTATTTCACTTTCAGTATTAGTTATCAGCTA
AATTTACATATAGATAAATGATTTACATATAGTCAAACTTTAATTCAATT
ACTCCTGCAAGAATTTATTCACTGTGTGAATTTGATAAAAAAATTTTAAA
ATAAACATAAATATATTAATAAAGAAGACAAAACAGTGAATAACACAAAC
CTCCTGTTATGTACACTAAAATTATTTATTCTGACCATTCACAAAACAAC
CTAGAGTGGAGAACTGATTTTTTCATCCCCCCCCCCAATATACTGATCAG
ACCTCATATAGTTACATACTGCCATTAATTTAATCAATTTACAAATCTTC
ATGATGTGATATTATATAATTGTGTAATATAATGTTATATTAAAAATGTT
AATGGCATACAAAATTGATAAATAGGAGCACAAAATGGGGTACAGGCCAG
AATCTCTACCTGCAAGAGGCTAGGTTCCATACCTAGTCTGACTGGGATAC
AAAGCTGAGTCTTTAAAGAAAAACAAGTGATAAAATGAAACATATTTTTC
ACCACAGTAATGGTTAAAACTTATTGACAACTTGACATTGTTGTGTCT

Query= MSMg01no130_m21.b1 MSMg01no130_m21.b1 CHROMAT_FILE:
MSMg01no130_m21.b1 PHD_FILE: MSMg01no130_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:47 2005
         (649 letters)



>mm_chr3_124293648_124294696
          Length = 1049

 Score = 1149 bits (594), Expect = 0.0
 Identities = 633/646 (97%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattctccactgctttgcactgatacatgcaatgccatgatgtgcccagaaaacagttt 62
           ||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctccactgcagtgaactgatacatgcaatgccatgatgtgcccagaaaacagttt 262

                                                                       
Query: 63  ttttgtggacaaccagctgcttcaatctgctacaatcactgaaacttgggaggaggaagt 122
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tcttgtggacaaccagctgcttcaatctgctacaatcactgaaacttgggaggaggaagt 322

                                                                       
Query: 123 ttaatatggatggcccatgcccagctgaggagcatcctacactctccttgatccattgcg 182
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 323 ttaatatggatggcccatgcccagctgaggagcatcctacactctccttgattcattgtg 382

                                                                       
Query: 183 aagtcttgcaattaacatctactcaaaagggaaacttttataatgaggctggagtggtaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aagtcttgcaattaacatctactcaaaagggaaacttttataatgaggctggagtggtaa 442

                                                                       
Query: 243 actgatacatgcatgcaatagcaagttgtcaggaattggttcaatagtatgcccatttgc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 actgatacatgcatgcaatagcaagttgtcaggaattggttcaatagtatgcccatttgc 502

                                                                       
Query: 303 taaaatcacaattgtccattctaccataggactgctgtttgaggctcttggccctgatac 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 taaaatcacaattgtccattctaccataggactgctgtttgaggctcttggccctgatac 562

                                                                       
Query: 363 cagggcagatgtgggattcaccttatgaaaaggaccttaaatccatcagggaatggttag 422
           ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 563 cagggcagatgtgggtttcaccttatgaaaaggaccttaaatccatcagggactggttag 622

                                                                       
Query: 423 ttaaccccatggcgtttgtaccataattgcaccagtgggcatattttgtcaggacagtga 482
           |||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 623 ttaaccccattgcgtttgtaccatcattgcaccagtgggcatattttatcaggacagtga 682

                                                                       
Query: 483 ctgttttatgtttcagggttcacagccaggaagagtggcgattcctatactagtttgttt 542
           ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 683 ctgttttatgtttcagggttcacagtcaggaagagtggcgattcctatactggtttgttt 742

                                                                       
Query: 543 taaggcacagatagctaacacataatcactcacagtcttcctatttttatcaaatggatg 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 taaggcacagatagctaacacataatcactcacagtcttcctatttttatcaaatggatg 802

                                                         
Query: 603 gaacttgaaaatatcatcctaagtgaggtaactcagtcacaaaaga 648
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gaacttgaaaatatcatcctaagtgaggtaactcagtcacaaaaga 848


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no130_m21.g1 MSMg01no130_m21.g1 CHROMAT_FILE:
MSMg01no130_m21.g1 PHD_FILE: MSMg01no130_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:47 2005
         (304 letters)



>mm_chr3_124440329_124441032
          Length = 704

 Score =  588 bits (304), Expect = e-172
 Identities = 304/304 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatactgatcagacctcatatagttacatactgccattaatttaatcaatttacaaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atatactgatcagacctcatatagttacatactgccattaatttaatcaatttacaaatc 445

                                                                       
Query: 61  ttcatgatgtgatattatataattgtgtaatataatgttatattaaaaatgttaatggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttcatgatgtgatattatataattgtgtaatataatgttatattaaaaatgttaatggca 385

                                                                       
Query: 121 tacaaaattgataaataggagcacaaaatggggtacaggccagaatctctacctgcaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tacaaaattgataaataggagcacaaaatggggtacaggccagaatctctacctgcaaga 325

                                                                       
Query: 181 ggctaggttccatacctagtctgactgggatacaaagctgagtctttaaagaaaaacaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggctaggttccatacctagtctgactgggatacaaagctgagtctttaaagaaaaacaag 265

                                                                       
Query: 241 tgataaaatgaaacatatttttcaccacagtaatggttaaaacttattgacaacttgaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgataaaatgaaacatatttttcaccacagtaatggttaaaacttattgacaacttgaca 205

               
Query: 301 ttgt 304
           ||||
Sbjct: 204 ttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)