BAC Information

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BAC

Clone NameMSMg01-130N04
Chromosome3 (Build37)
Map Location 100,654,183 - 100,654,373
singlet/doubletsinglet
Overlap geneVtcn1
Upstream geneSpag17, LOC623045, Wdr3, Gdap2, LOC195514, 4930431B09Rik, OTTMUSG00000007026, Man1a2
Downstream geneTrim45, Ttf2, Igsf2, Ptgfrn, LOC668578, LOC668583, LOC669017, Cd2, LOC100043490, Igsf3, LOC100043032, Atp1a1, LOC100043036, BC037703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130N04.T7 (MSMg01no130_n04.b1)MSMg01-130N04.TJ (MSMg01no130_n04.g1)
ACCAG338480AG338481
length723716
length of high quality
(start - end)
191 (124 - 314)390 (65 - 454)
definitionCHROMAT_FILE: MSMg01no130_n04.b1 PHD_FILE: MSMg01no130_n04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:49 2005CHROMAT_FILE: MSMg01no130_n04.g1 PHD_FILE: MSMg01no130_n04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACTGCTTTGCCAAGTGGTCCCCAGTTCAAGGCACCAATTTTCCCAAAAAA
ATATTGAAAAGAGTAGGCCCCTTGAGATGTAAGCCATTAAGAGAAGGCAC
AGTCTGGACTCAGTCCTGGCTTGATTTCTGGGCTACATTGTTGGCTTGAA
GGAACAAGAGGCTGAGGCAGCTGATGTGAGAATCAGCTTGGTAAATGGGA
AACTCAGGGCTGGACAGCCTGAGCCCTCGGTGTGTAGGGTGGACAGACAG
TGGGACAGCTCCAGGACCTTAGGCGGCAGCAATGTCAACTGACACCTTCC
CTTCTTGNCTCNGTCTCCGNGCCTCCCCCTCTTCCAGCTCATTGTTATTC
AGAAGCAACTTCTTCTCAAAACAAAAAAAAATCTCCCGGTGGTAGTGTAC
AATGCTACATTTTATGTTGGTATTGGAGGCTAAGACTATGAAATGGACCA
CTTATTCTAAATCGTGCGTAGGATGTAGAGATTGTGCAGAGAATAGCGTG
TTAAACGAGCCGAGAGATGTCACGCTCAGGGTCTCTCCTCATCACATATG
TTCCTTCCATGCCCACCAACGCACACGGAAGTCGATAGCACCACATTGTG
TCATGTCTGAGCTATCCATATCCCTCATGCCCCCCGTTTTTTTCACCCCC
TATACCCCCACTCCTTTATGTTT
TGAAGTGGGTAGCCTGGCGACCGCCTGGTTCTGACGAGGGGTGAACTATA
GAATTTCCACGAAATCCTATCCTGGAATTCCATAATGTGCTTAAAACCAG
GCCCGCAAGCTCACTTGGGAGTGAGTCTCTCTATATATGTTGGTCATCCT
GTTGCAGTAAATCTCCACCCCAAATATGCCCCGGCTATGGAAACACAACA
CAGTTAATATGATTACATGCTTTGTGCCTAGATTGGGCAGATCTACTGCT
ACACTACCATCTTCCACATCTATGAGACCCCTTAGAACTTGTGGATACTC
CAGGCCATGTGCTTCTGTTCCGCTTCTCTTCTTCTTTCTCCTCCTCTGAG
TCCTTTCCCTCTTCCATTTTCTTCTTCTTCTCTCTCCTCATCTTCCACTC
CACCTTCCCTTTTATCTGCCCAATAATCAGCTCTTCTTTATTTTACAAAT
GAAGGTGGGAAGCAGGTTTATTGGAAATCATCTGAGTGTTGACTCATTCC
TCATTCTAAACCACTCACAGGAGAACAGAATTAACATTAAATATTAATTA
GTCCCAAGACTATCCACAAAACACCCCAGCATGTTGTACTTCTGCAGAAT
AAAACACTCTTTGCATTTACACACTATTCGAGCCTGTGGTTTCATTCCTC
ATTTGAATCATGTTCCTCTCACATTATCATCAACTAATCCTGCTTTAATA
ACAAATCTTGTCAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_n04.b1 MSMg01no130_n04.b1 CHROMAT_FILE:
MSMg01no130_n04.b1 PHD_FILE: MSMg01no130_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:49 2005
         (191 letters)



>mm_chr3_100653983_100654573
          Length = 591

 Score =  346 bits (179), Expect = e-100
 Identities = 188/191 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagatgtaagccattaagagaaggcacagtctggactcagtcctggcttgatttctgggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gagatgtaagccattaagagaaggcacagtctggactcagtcctggcttgatttctgggc 332

                                                                       
Query: 61  tacattgttggcttgaaggaacaagaggctgaggcagctgatgtgagaatcagcttggta 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tacattgttggcttgaagggacaagaggctgaggcagctgatgtgagaatcagcttggta 272

                                                                       
Query: 121 aatgggaaactcagggctggacagcctgagccctcggtgtgtagggtggacagacagtgg 180
           ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 271 aatgggaaactcagggctgcacagcccgagccctcggtgtgtagggtggacagacagtgg 212

                      
Query: 181 gacagctccag 191
           |||||||||||
Sbjct: 211 gacagctccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)